| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is 89052744
Identifier: 89052744
GI number: 89052744
Start: 253176
End: 254657
Strand: Direct
Name: 89052744
Synonym: Jann_0253
Alternate gene names: NA
Gene position: 253176-254657 (Clockwise)
Preceding gene: 89052742
Following gene: 89052749
Centisome position: 5.86
GC content: 65.79
Gene sequence:
>1482_bases ATGTGGCGGGTCATGAAACAGTGGATTTTCGCAAGCGTGGCCATGCTGGCGCTGGTGCTGGGCATCGTGGTGCAGGAGCG CGCGCGGTTGGGCGTGGAGGTGCGTCACGACCATGTCGGCACGACGCCGGTGACGGTGACGCAAACGCCCGGGGCCGAAG GGCCGGTGGTCGTGATCGTCCATGGCTTCGCGGGATCGCGGCAAATGATGAGCGCGTGGTCCCTGAGTTTCGCACGCGCG GGTTACATTGCTGTGGCGCTGGACCTGGAAGGGCACGGGCGCAATCCGGTGCCGATGTCGGGCGATCTGACGTCTTTGGA CGGCACGACGCGGATTTTGCTGGAGGAGATCTCGCGGGTCACCGATTGGGCGCTGGATCTGCCCGGCGCAGACGGTCGGG TGGCGTTGGTGGGCCATTCCATGTCGTCCGATCTGGTCGTGCGCGCCGGGATCAATGACCCAAGGGTAGAGGCGGTTGTG GGACTGTCCGTCTTTTCGCGCGCTGTGACACCTGATGAGCCCGCAAACCTGTTGATCCTGAACGGTGCCTGGGAAGGCGC TTTGCGGGCGGAGGCGCAACGGGTGATGGCGGAGCTTGGCGCGGTGGAGGGCGAGACGGTCGGCGCACCCGGAGAGGATT TCGCGCGCCGCGCCGTGGCGGTGCCTTTGGCGGAACATGTGAGTATCCTGTTCGCCGTCGGCGGCTTGCAGGAGGCCGTC GATTGGCTGGGGGCCACGTTTGATCGGAATGGGGCGCAGGTGCCTCGGCTTGGGTGGGCGCTGTTGGTGATGTTGGCGGG TGCGGTGATGTTGGCGCGCCCCTTTGCGGGTGTCTTGCCCACAGGCGCGCCGCCAGAAGCGTTGCCACGGCGCGTGTTCT GGGCGTTGGCGCTTGTGCCCGCATTGGTCGTGCCGCCTGTGGCCGTGATGATGGACGTCGGCGCACTGCCCGTCCTGGTG GCGGATTATCTGGCGGTCCATCTGGCCCTATACGGCACGTTAGTCATTGGCGGAGCACTGGTGGCCGGGTGGCGACCGGA GGCGCGGGGATGGATTTGGGGTCTTGCATTGGCTGTGTTTGGCATCGGCCTGTTCGGGATGTTGCTGGACCGCTATGCGG CGTCGTTCATTCCGCATCCGGGCCGCGTGGTGATCATCCTGGCGATTGTACCCGGCGCGATCCTGGCCATGTGGGCCGAC GCGGTGCTGACGCAGGCCACGCGGGCGAAGCTCTGGCAACGGGCGGTGGTGCGGGGGGCGTTCCTGGGCTCGCTTGCATT CGCCGTCGCGCTGGATTTTGAGCGACTGTTCTTCCTTGTCCTGATCTTCCCGGTGATCCTGCTGTTTTATGGCACGTTCG GGATGATGGGCCGTTGGGTCGGGCGCCGAACCGGATCAACACTGGCGGTGGGCGTCGGGTTGGGCGCGCTATTGGGATGG GCGTTGGGTGTGTCGTTCCCGATGTATGTGATGGGCGGCTAA
Upstream 100 bases:
>100_bases TGGTCATGAGGGTGACGGTGAACATGGGCTCGAACCTCCGGTCGTGTTTTGGGCAACATAGGCGGCGGAGGCGTGCTGGA CCAGTGGATTGGCGCGGGCT
Downstream 100 bases:
>100_bases CACCGTTCACTGGGGCCTGCCCCCAAACGCACCCTATATTGGGGGCCTGCCCCCAAACCCCCGGAGTTGTACGGCCCAGA TGAAAGACGAGCGCTTAGGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 493; Mature: 493
Protein sequence:
>493_residues MWRVMKQWIFASVAMLALVLGIVVQERARLGVEVRHDHVGTTPVTVTQTPGAEGPVVVIVHGFAGSRQMMSAWSLSFARA GYIAVALDLEGHGRNPVPMSGDLTSLDGTTRILLEEISRVTDWALDLPGADGRVALVGHSMSSDLVVRAGINDPRVEAVV GLSVFSRAVTPDEPANLLILNGAWEGALRAEAQRVMAELGAVEGETVGAPGEDFARRAVAVPLAEHVSILFAVGGLQEAV DWLGATFDRNGAQVPRLGWALLVMLAGAVMLARPFAGVLPTGAPPEALPRRVFWALALVPALVVPPVAVMMDVGALPVLV ADYLAVHLALYGTLVIGGALVAGWRPEARGWIWGLALAVFGIGLFGMLLDRYAASFIPHPGRVVIILAIVPGAILAMWAD AVLTQATRAKLWQRAVVRGAFLGSLAFAVALDFERLFFLVLIFPVILLFYGTFGMMGRWVGRRTGSTLAVGVGLGALLGW ALGVSFPMYVMGG
Sequences:
>Translated_493_residues MWRVMKQWIFASVAMLALVLGIVVQERARLGVEVRHDHVGTTPVTVTQTPGAEGPVVVIVHGFAGSRQMMSAWSLSFARA GYIAVALDLEGHGRNPVPMSGDLTSLDGTTRILLEEISRVTDWALDLPGADGRVALVGHSMSSDLVVRAGINDPRVEAVV GLSVFSRAVTPDEPANLLILNGAWEGALRAEAQRVMAELGAVEGETVGAPGEDFARRAVAVPLAEHVSILFAVGGLQEAV DWLGATFDRNGAQVPRLGWALLVMLAGAVMLARPFAGVLPTGAPPEALPRRVFWALALVPALVVPPVAVMMDVGALPVLV ADYLAVHLALYGTLVIGGALVAGWRPEARGWIWGLALAVFGIGLFGMLLDRYAASFIPHPGRVVIILAIVPGAILAMWAD AVLTQATRAKLWQRAVVRGAFLGSLAFAVALDFERLFFLVLIFPVILLFYGTFGMMGRWVGRRTGSTLAVGVGLGALLGW ALGVSFPMYVMGG >Mature_493_residues MWRVMKQWIFASVAMLALVLGIVVQERARLGVEVRHDHVGTTPVTVTQTPGAEGPVVVIVHGFAGSRQMMSAWSLSFARA GYIAVALDLEGHGRNPVPMSGDLTSLDGTTRILLEEISRVTDWALDLPGADGRVALVGHSMSSDLVVRAGINDPRVEAVV GLSVFSRAVTPDEPANLLILNGAWEGALRAEAQRVMAELGAVEGETVGAPGEDFARRAVAVPLAEHVSILFAVGGLQEAV DWLGATFDRNGAQVPRLGWALLVMLAGAVMLARPFAGVLPTGAPPEALPRRVFWALALVPALVVPPVAVMMDVGALPVLV ADYLAVHLALYGTLVIGGALVAGWRPEARGWIWGLALAVFGIGLFGMLLDRYAASFIPHPGRVVIILAIVPGAILAMWAD AVLTQATRAKLWQRAVVRGAFLGSLAFAVALDFERLFFLVLIFPVILLFYGTFGMMGRWVGRRTGSTLAVGVGLGALLGW ALGVSFPMYVMGG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 52173; Mature: 52173
Theoretical pI: Translated: 6.98; Mature: 6.98
Prosite motif: PS01309 UPF0057
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWRVMKQWIFASVAMLALVLGIVVQERARLGVEVRHDHVGTTPVTVTQTPGAEGPVVVIV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEECCCCCCCEEEEE HGFAGSRQMMSAWSLSFARAGYIAVALDLEGHGRNPVPMSGDLTSLDGTTRILLEEISRV ECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH TDWALDLPGADGRVALVGHSMSSDLVVRAGINDPRVEAVVGLSVFSRAVTPDEPANLLIL HHHHEECCCCCCEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEE NGAWEGALRAEAQRVMAELGAVEGETVGAPGEDFARRAVAVPLAEHVSILFAVGGLQEAV ECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCHHHHH DWLGATFDRNGAQVPRLGWALLVMLAGAVMLARPFAGVLPTGAPPEALPRRVFWALALVP HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHHH ALVVPPVAVMMDVGALPVLVADYLAVHLALYGTLVIGGALVAGWRPEARGWIWGLALAVF HHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH GIGLFGMLLDRYAASFIPHPGRVVIILAIVPGAILAMWADAVLTQATRAKLWQRAVVRGA HHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FLGSLAFAVALDFERLFFLVLIFPVILLFYGTFGMMGRWVGRRTGSTLAVGVGLGALLGW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHH ALGVSFPMYVMGG HHHCCCCEEEECC >Mature Secondary Structure MWRVMKQWIFASVAMLALVLGIVVQERARLGVEVRHDHVGTTPVTVTQTPGAEGPVVVIV CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCEEEEECCCCCCCEEEEE HGFAGSRQMMSAWSLSFARAGYIAVALDLEGHGRNPVPMSGDLTSLDGTTRILLEEISRV ECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH TDWALDLPGADGRVALVGHSMSSDLVVRAGINDPRVEAVVGLSVFSRAVTPDEPANLLIL HHHHEECCCCCCEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEE NGAWEGALRAEAQRVMAELGAVEGETVGAPGEDFARRAVAVPLAEHVSILFAVGGLQEAV ECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCHHHHH DWLGATFDRNGAQVPRLGWALLVMLAGAVMLARPFAGVLPTGAPPEALPRRVFWALALVP HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHHH ALVVPPVAVMMDVGALPVLVADYLAVHLALYGTLVIGGALVAGWRPEARGWIWGLALAVF HHHHCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH GIGLFGMLLDRYAASFIPHPGRVVIILAIVPGAILAMWADAVLTQATRAKLWQRAVVRGA HHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FLGSLAFAVALDFERLFFLVLIFPVILLFYGTFGMMGRWVGRRTGSTLAVGVGLGALLGW HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHH ALGVSFPMYVMGG HHHCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA