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The map label for this gene is ygcA [C]

Identifier: 89052577

GI number: 89052577

Start: 80706

End: 81965

Strand: Direct

Name: ygcA [C]

Synonym: Jann_0086

Alternate gene names: 89052577

Gene position: 80706-81965 (Clockwise)

Preceding gene: 89052576

Following gene: 89052578

Centisome position: 1.87

GC content: 64.21

Gene sequence:

>1260_bases
ATGCGTTCTCTCCGGCAGTGCCCCGTGCCTGAGGTCACAATCACCCGCCTCGGCCACCTTGGAGACGGCATCGCGACTGA
CGATCACGGTGGCCCCATCTTCGTGCCGCTGACCCTTCCCGGAGAGGTCGTGTCCGGGGAGATCTACGGCGACCGCATCG
CCGCCCCGTCTGTGATCACACCCTCGTCCGATCGCGTGAAAGCGCCCTGCCCGCACTACAAATCCTGTGGCGGGTGCAGT
TTGATGCATGCCTCCGACCCGTTTGTCGCGACGTGGAAAGAAAATGTGATCACAACGGCTTTGCAGGCCCACGATCTTCC
CACACCCCTGCGCCCCATCGTGACCTCCGCCCGCAAGTCCCGCCGTCGGGCAACCCTTGCCGGTACGCGCACCAAGAAGG
GGGCGATGATCGGGTTTCACGCGCGCAAATCAGGCACTATTGTGCCGACTAGAGACTGCTTCTTGCTGGAACCGGCCCTG
CTGGAAACCCTCCCTGCGCTGGAGAGAATTGTGAAACTGGGCGCGTCACGTTCGGCCACTTTGGGTCTGGCGCTCACGCT
CACGGATACCGGCATCGACCTGCATGTGACGGGTGCAAAACCCCTTGATGGACCGCTTCGCGCCGCGCTTCCGCAGGTGC
GGGGCAGCTTTTCGCGCCTCACTTGGGGGGATGAGCCTGTCTATACCGAAACGCCACCCCGCCTGACCCTTGGCACCGCC
CGCGTCACGCCTCCGCCGGGCGCATTTCTACAGGCCACACAAGACGGGGAAGCCGCGCTGCAGGCGGCGGTCGCAGAGGC
AACGCAGGGCGCCACACACATCGCGGACCTGTTCTGCGGCATCGGTACATTCACCCTGCCCCTCGCCCAAGCCGCGCCCG
TTCATGCCGTTGAGGCCGCGCCGGACCTGCTCGACGCGCTTGATCATGCCACACGCTTTGCCACCGGCCTCAAGCCCATC
ACGACCGAGGCGAGAGACCTCTACCGCCGCCCCCTTCTGCCTGATGAGCTGGCAAAATTCGACGCAATCGTCATCGACCC
GCCTCGCGCGGGTGCCGAGGCGCAAACCGAACAGATCGCCAAAGCGCACGTACCCGTTATCGCTGCCGTCTCCTGCAATC
CCGTGACCTTCGCGCGCGATGCCGCGATCTTAACGAAAGCGGGCTATGCGCTGGATTGGGTGCAACCCGTCGATCAATTC
CGCTGGTCGCCCCATGTGGAACTTGCGGCGCGGTTCACCCTTGCCCATATCAGCGATTAA

Upstream 100 bases:

>100_bases
GACGCCGCCGTGGCCCGCGCGGGCAATCAAATGGTGATCGAGCCGCCCGCCGACAAACCTCACGGTTTGAGAGAGGCGAC
GATCCTGTCGCCGGAAGGCT

Downstream 100 bases:

>100_bases
CCCACAGGAGCGCGCCATGAATGACTTTCGCACCCGCCTCGCCGATTGGCTCGCGCGTCCCGTCGTCAGCAATTTCATCA
TCGGCGTGATCATCTTCAAC

Product: (Uracil-5)-methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 419; Mature: 419

Protein sequence:

>419_residues
MRSLRQCPVPEVTITRLGHLGDGIATDDHGGPIFVPLTLPGEVVSGEIYGDRIAAPSVITPSSDRVKAPCPHYKSCGGCS
LMHASDPFVATWKENVITTALQAHDLPTPLRPIVTSARKSRRRATLAGTRTKKGAMIGFHARKSGTIVPTRDCFLLEPAL
LETLPALERIVKLGASRSATLGLALTLTDTGIDLHVTGAKPLDGPLRAALPQVRGSFSRLTWGDEPVYTETPPRLTLGTA
RVTPPPGAFLQATQDGEAALQAAVAEATQGATHIADLFCGIGTFTLPLAQAAPVHAVEAAPDLLDALDHATRFATGLKPI
TTEARDLYRRPLLPDELAKFDAIVIDPPRAGAEAQTEQIAKAHVPVIAAVSCNPVTFARDAAILTKAGYALDWVQPVDQF
RWSPHVELAARFTLAHISD

Sequences:

>Translated_419_residues
MRSLRQCPVPEVTITRLGHLGDGIATDDHGGPIFVPLTLPGEVVSGEIYGDRIAAPSVITPSSDRVKAPCPHYKSCGGCS
LMHASDPFVATWKENVITTALQAHDLPTPLRPIVTSARKSRRRATLAGTRTKKGAMIGFHARKSGTIVPTRDCFLLEPAL
LETLPALERIVKLGASRSATLGLALTLTDTGIDLHVTGAKPLDGPLRAALPQVRGSFSRLTWGDEPVYTETPPRLTLGTA
RVTPPPGAFLQATQDGEAALQAAVAEATQGATHIADLFCGIGTFTLPLAQAAPVHAVEAAPDLLDALDHATRFATGLKPI
TTEARDLYRRPLLPDELAKFDAIVIDPPRAGAEAQTEQIAKAHVPVIAAVSCNPVTFARDAAILTKAGYALDWVQPVDQF
RWSPHVELAARFTLAHISD
>Mature_419_residues
MRSLRQCPVPEVTITRLGHLGDGIATDDHGGPIFVPLTLPGEVVSGEIYGDRIAAPSVITPSSDRVKAPCPHYKSCGGCS
LMHASDPFVATWKENVITTALQAHDLPTPLRPIVTSARKSRRRATLAGTRTKKGAMIGFHARKSGTIVPTRDCFLLEPAL
LETLPALERIVKLGASRSATLGLALTLTDTGIDLHVTGAKPLDGPLRAALPQVRGSFSRLTWGDEPVYTETPPRLTLGTA
RVTPPPGAFLQATQDGEAALQAAVAEATQGATHIADLFCGIGTFTLPLAQAAPVHAVEAAPDLLDALDHATRFATGLKPI
TTEARDLYRRPLLPDELAKFDAIVIDPPRAGAEAQTEQIAKAHVPVIAAVSCNPVTFARDAAILTKAGYALDWVQPVDQF
RWSPHVELAARFTLAHISD

Specific function: Could Be A 23s rRNA (Uracil-5-)-Methyltransferase. [C]

COG id: COG2265

COG function: function code J; SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 TRAM domain [H]

Homologues:

Organism=Escherichia coli, GI1789148, Length=428, Percent_Identity=29.6728971962617, Blast_Score=133, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016027
- InterPro:   IPR002792
- InterPro:   IPR010280 [H]

Pfam domain/function: PF05958 tRNA_U5-meth_tr [H]

EC number: NA

Molecular weight: Translated: 44523; Mature: 44523

Theoretical pI: Translated: 7.37; Mature: 7.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSLRQCPVPEVTITRLGHLGDGIATDDHGGPIFVPLTLPGEVVSGEIYGDRIAAPSVIT
CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEECEECCCCCCCCCEEC
PSSDRVKAPCPHYKSCGGCSLMHASDPFVATWKENVITTALQAHDLPTPLRPIVTSARKS
CCCCCCCCCCCCCCCCCCEEEEECCCCEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
RRRATLAGTRTKKGAMIGFHARKSGTIVPTRDCFLLEPALLETLPALERIVKLGASRSAT
HHHHHHCCCCCCCCCEEEEEECCCCCEEECCCCEEECHHHHHHHHHHHHHHHHCCCCCCE
LGLALTLTDTGIDLHVTGAKPLDGPLRAALPQVRGSFSRLTWGDEPVYTETPPRLTLGTA
EEEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCEEECCE
RVTPPPGAFLQATQDGEAALQAAVAEATQGATHIADLFCGIGTFTLPLAQAAPVHAVEAA
ECCCCCCCEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHC
PDLLDALDHATRFATGLKPITTEARDLYRRPLLPDELAKFDAIVIDPPRAGAEAQTEQIA
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHCCEEEECCCCCCCHHHHHHHH
KAHVPVIAAVSCNPVTFARDAAILTKAGYALDWVQPVDQFRWSPHVELAARFTLAHISD
HHCCCEEEEEECCCEEEECCHHHHHHCCCEEHHHHHHHHHCCCCCCEEEEEEEEEECCC
>Mature Secondary Structure
MRSLRQCPVPEVTITRLGHLGDGIATDDHGGPIFVPLTLPGEVVSGEIYGDRIAAPSVIT
CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEECEECCCCCCCCCEEC
PSSDRVKAPCPHYKSCGGCSLMHASDPFVATWKENVITTALQAHDLPTPLRPIVTSARKS
CCCCCCCCCCCCCCCCCCEEEEECCCCEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
RRRATLAGTRTKKGAMIGFHARKSGTIVPTRDCFLLEPALLETLPALERIVKLGASRSAT
HHHHHHCCCCCCCCCEEEEEECCCCCEEECCCCEEECHHHHHHHHHHHHHHHHCCCCCCE
LGLALTLTDTGIDLHVTGAKPLDGPLRAALPQVRGSFSRLTWGDEPVYTETPPRLTLGTA
EEEEEEEEECCEEEEEECCCCCCCHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCEEECCE
RVTPPPGAFLQATQDGEAALQAAVAEATQGATHIADLFCGIGTFTLPLAQAAPVHAVEAA
ECCCCCCCEEEECCCHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHCCCCCHHHHHC
PDLLDALDHATRFATGLKPITTEARDLYRRPLLPDELAKFDAIVIDPPRAGAEAQTEQIA
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHCCEEEECCCCCCCHHHHHHHH
KAHVPVIAAVSCNPVTFARDAAILTKAGYALDWVQPVDQFRWSPHVELAARFTLAHISD
HHCCCEEEEEECCCEEEECCHHHHHHCCCEEHHHHHHHHHCCCCCCEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]