Click here to switch to the map view.

The map label for this gene is 89052516

Identifier: 89052516

GI number: 89052516

Start: 24005

End: 24262

Strand: Reverse

Name: 89052516

Synonym: Jann_0025

Alternate gene names: NA

Gene position: 24262-24005 (Counterclockwise)

Preceding gene: 89052517

Following gene: 89052515

Centisome position: 0.56

GC content: 58.53

Gene sequence:

>258_bases
ATGGCGCGCAATACATCGGTCTCACTCGGGGATCACTTCGGAGAATTCATCAATGAAAAAGTGCAAGAAGGCCGCTATGG
CTCCGCCAGCGACGTGATCCGCGCAGGCCTCAGGCTTCTGGAAGAGGAAGAGGCGAAACTGGCGCATCTGCGAGAGCTGA
TCGCGCAAGGGGATGCGAGCGGGCCGGGCAAACCTTGGAATTACGAGGACTGGAAAGCCAAGCGACACGCCGACTATGCG
AAACGGCGCGCTTTGTGA

Upstream 100 bases:

>100_bases
CGCGGGGAAGTGAAGGCGCTGCGGGGTGGTGTTGAGGAGTGAGTTGACATTTTGCAATAGTATACCAAATATTGGTACTA
GTACTACAGGAGGCTTTGTT

Downstream 100 bases:

>100_bases
AAGAGCTTGTCATTGCGCCGCGCGCGGATGCCGACCTGATCGGCATCTATGACTACACGTCGGATACATGGGGCCTCGAC
CAGGCAGATAAATATCTAGA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 85; Mature: 84

Protein sequence:

>85_residues
MARNTSVSLGDHFGEFINEKVQEGRYGSASDVIRAGLRLLEEEEAKLAHLRELIAQGDASGPGKPWNYEDWKAKRHADYA
KRRAL

Sequences:

>Translated_85_residues
MARNTSVSLGDHFGEFINEKVQEGRYGSASDVIRAGLRLLEEEEAKLAHLRELIAQGDASGPGKPWNYEDWKAKRHADYA
KRRAL
>Mature_84_residues
ARNTSVSLGDHFGEFINEKVQEGRYGSASDVIRAGLRLLEEEEAKLAHLRELIAQGDASGPGKPWNYEDWKAKRHADYAK
RRAL

Specific function: Unknown

COG id: COG3609

COG function: function code K; Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0156 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005360
- InterPro:   IPR010985
- InterPro:   IPR022789 [H]

Pfam domain/function: PF03693 RHH_2 [H]

EC number: NA

Molecular weight: Translated: 9583; Mature: 9452

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARNTSVSLGDHFGEFINEKVQEGRYGSASDVIRAGLRLLEEEEAKLAHLRELIAQGDAS
CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GPGKPWNYEDWKAKRHADYAKRRAL
CCCCCCCCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ARNTSVSLGDHFGEFINEKVQEGRYGSASDVIRAGLRLLEEEEAKLAHLRELIAQGDAS
CCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GPGKPWNYEDWKAKRHADYAKRRAL
CCCCCCCCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10910347 [H]