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The map label for this gene is ribD [H]

Identifier: 88658608

GI number: 88658608

Start: 158116

End: 159198

Strand: Direct

Name: ribD [H]

Synonym: ECH_0169

Alternate gene names: 88658608

Gene position: 158116-159198 (Clockwise)

Preceding gene: 88657782

Following gene: 88658035

Centisome position: 13.44

GC content: 33.89

Gene sequence:

>1083_bases
ATGATACGTTACGATAAGAAATTTATGTCTTTAGCATTAAGGATTGCAAGACGTGGTCTTGGTAATGTATTTCCTAATCC
GGCTGTTGGATGTATTGTGGTGAATCATGGAATGGTGGTAGGACGTGGATATACACAAGTTGGTGGTAGGCCACATGCAG
AAGTTATTGCATTAAATAATGCTGGGCATTTAGCAAAAGGTTCTACTGTATATGTAACTCTTGAGCCATGCTCCCATTAT
GGGCAAACAGGCCCTTGTGCATTAAAGTTAATAGATGCTGGTGTTAAACGGATGGTAATAGCTGCTAAGGATCCTGATGT
GCGTGTTTCTGGAAATGGTATAGAATTATTACGTAATGCGGGTATAGATGTAAAGTGTGGTGTCATGTATGAAGAGGCAC
GAGAATTAAATATTGGTTTTTTTTATAGTAAAATCAAGAATAGACCTTTTATTACAGTGAAGTTAGCATCTACTTTAGAT
GGGAAAATAGCGTTAAAAGATGGTAATAGTCGATGGATTACAAATGAGTTAACTCGTAATTGGGTACATAAACAGCGTTC
TATGTATGATGCAATTATGGTTGGTAGTAATACTATTGTTCAAGATAATCCAATGCTTAATACTAGGCTTCCTGGTTTAG
AGTGTTATTCTCCAGTAAGGATAGTAATTGATCGTTTTGGTAAAGTTTGTGACTATCATAATATCATAAAAACTTCTGAT
GTTATCCCTACGTATATTTTGACAAATGATGTTCCTCAAACAAAGTTGGGTAAAGCCAGTTGTTTAGTAGTTGATGATAA
AGATAATTTTTTAAGAAGTGCGATGAAAATGCTTTCTGTAAAAATAGGTATTACTCGGTTATTTGTTGAAGGAGGTGGTG
TTTTAATTACAGAATTGCTTAAAAATCAGTTGATTGATAGAATTATATGGTGTAGATCAAATAAAATTTTTGGCAATGAT
GCAATACCATCTATTGGTGATTTGGATATCTTGACACTACAGTGTGGTTATAATTTCAGAGCAGTAGATACATTATATTT
TAAGGATGATATTGTAGAAATTTTAGAGCATTGTACCGAATAA

Upstream 100 bases:

>100_bases
AACTTGTTTATAAACTCTAAGAAATATATAGTAACATTATGAAAAAATATCAAGAGTTATAAGCTTTGTTAGTGTGGTTT
TTCTGTGTTGTTAATATTTT

Downstream 100 bases:

>100_bases
ACCGAATAAATATACTTTAACTGTGACATCTTAGTTTAATAGAACTTTATATTTATATATGATTAATATATAATGATAAT
GGTATGTGGTTATAACTGCT

Product: riboflavin biosynthesis protein RibD

Products: NA

Alternate protein names: Diaminohydroxyphosphoribosylaminopyrimidine deaminase; DRAP deaminase; Riboflavin-specific deaminase; 5-amino-6-(5-phosphoribosylamino)uracil reductase; HTP reductase [H]

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MIRYDKKFMSLALRIARRGLGNVFPNPAVGCIVVNHGMVVGRGYTQVGGRPHAEVIALNNAGHLAKGSTVYVTLEPCSHY
GQTGPCALKLIDAGVKRMVIAAKDPDVRVSGNGIELLRNAGIDVKCGVMYEEARELNIGFFYSKIKNRPFITVKLASTLD
GKIALKDGNSRWITNELTRNWVHKQRSMYDAIMVGSNTIVQDNPMLNTRLPGLECYSPVRIVIDRFGKVCDYHNIIKTSD
VIPTYILTNDVPQTKLGKASCLVVDDKDNFLRSAMKMLSVKIGITRLFVEGGGVLITELLKNQLIDRIIWCRSNKIFGND
AIPSIGDLDILTLQCGYNFRAVDTLYFKDDIVEILEHCTE

Sequences:

>Translated_360_residues
MIRYDKKFMSLALRIARRGLGNVFPNPAVGCIVVNHGMVVGRGYTQVGGRPHAEVIALNNAGHLAKGSTVYVTLEPCSHY
GQTGPCALKLIDAGVKRMVIAAKDPDVRVSGNGIELLRNAGIDVKCGVMYEEARELNIGFFYSKIKNRPFITVKLASTLD
GKIALKDGNSRWITNELTRNWVHKQRSMYDAIMVGSNTIVQDNPMLNTRLPGLECYSPVRIVIDRFGKVCDYHNIIKTSD
VIPTYILTNDVPQTKLGKASCLVVDDKDNFLRSAMKMLSVKIGITRLFVEGGGVLITELLKNQLIDRIIWCRSNKIFGND
AIPSIGDLDILTLQCGYNFRAVDTLYFKDDIVEILEHCTE
>Mature_360_residues
MIRYDKKFMSLALRIARRGLGNVFPNPAVGCIVVNHGMVVGRGYTQVGGRPHAEVIALNNAGHLAKGSTVYVTLEPCSHY
GQTGPCALKLIDAGVKRMVIAAKDPDVRVSGNGIELLRNAGIDVKCGVMYEEARELNIGFFYSKIKNRPFITVKLASTLD
GKIALKDGNSRWITNELTRNWVHKQRSMYDAIMVGSNTIVQDNPMLNTRLPGLECYSPVRIVIDRFGKVCDYHNIIKTSD
VIPTYILTNDVPQTKLGKASCLVVDDKDNFLRSAMKMLSVKIGITRLFVEGGGVLITELLKNQLIDRIIWCRSNKIFGND
AIPSIGDLDILTLQCGYNFRAVDTLYFKDDIVEILEHCTE

Specific function: Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate [H]

COG id: COG0117

COG function: function code H; Pyrimidine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the HTP reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786616, Length=328, Percent_Identity=38.4146341463415, Blast_Score=227, Evalue=9e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016192
- InterPro:   IPR002125
- InterPro:   IPR016193
- InterPro:   IPR004794
- InterPro:   IPR011549
- InterPro:   IPR002734 [H]

Pfam domain/function: PF00383 dCMP_cyt_deam_1; PF01872 RibD_C [H]

EC number: =3.5.4.26; =1.1.1.193 [H]

Molecular weight: Translated: 39982; Mature: 39982

Theoretical pI: Translated: 8.93; Mature: 8.93

Prosite motif: PS00903 CYT_DCMP_DEAMINASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRYDKKFMSLALRIARRGLGNVFPNPAVGCIVVNHGMVVGRGYTQVGGRPHAEVIALNN
CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCEEEECCHHHCCCCCCEEEEEECC
AGHLAKGSTVYVTLEPCSHYGQTGPCALKLIDAGVKRMVIAAKDPDVRVSGNGIELLRNA
CCCCCCCCEEEEEECCHHCCCCCCCHHHHEECCCCEEEEEEECCCCEEECCCHHHHHHHC
GIDVKCGVMYEEARELNIGFFYSKIKNRPFITVKLASTLDGKIALKDGNSRWITNELTRN
CCCEEEEEEEHHHHHCCEEEEEHHHCCCCEEEEEEECCCCCEEEEECCCCCEEHHHHHHH
WVHKQRSMYDAIMVGSNTIVQDNPMLNTRLPGLECYSPVRIVIDRFGKVCDYHNIIKTSD
HHHHHHHHHHEEEECCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
VIPTYILTNDVPQTKLGKASCLVVDDKDNFLRSAMKMLSVKIGITRLFVEGGGVLITELL
CCCEEEEECCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHH
KNQLIDRIIWCRSNKIFGNDAIPSIGDLDILTLQCGYNFRAVDTLYFKDDIVEILEHCTE
HHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECCCCEEEEEEEEEHHHHHHHHHHHCC
>Mature Secondary Structure
MIRYDKKFMSLALRIARRGLGNVFPNPAVGCIVVNHGMVVGRGYTQVGGRPHAEVIALNN
CCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCEEEECCHHHCCCCCCEEEEEECC
AGHLAKGSTVYVTLEPCSHYGQTGPCALKLIDAGVKRMVIAAKDPDVRVSGNGIELLRNA
CCCCCCCCEEEEEECCHHCCCCCCCHHHHEECCCCEEEEEEECCCCEEECCCHHHHHHHC
GIDVKCGVMYEEARELNIGFFYSKIKNRPFITVKLASTLDGKIALKDGNSRWITNELTRN
CCCEEEEEEEHHHHHCCEEEEEHHHCCCCEEEEEEECCCCCEEEEECCCCCEEHHHHHHH
WVHKQRSMYDAIMVGSNTIVQDNPMLNTRLPGLECYSPVRIVIDRFGKVCDYHNIIKTSD
HHHHHHHHHHEEEECCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
VIPTYILTNDVPQTKLGKASCLVVDDKDNFLRSAMKMLSVKIGITRLFVEGGGVLITELL
CCCEEEEECCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHCCEEEEEEECCCCHHHHHH
KNQLIDRIIWCRSNKIFGNDAIPSIGDLDILTLQCGYNFRAVDTLYFKDDIVEILEHCTE
HHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECCCCEEEEEEEEEHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]