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The map label for this gene is yhcM [H]

Identifier: 88658545

GI number: 88658545

Start: 387085

End: 388140

Strand: Direct

Name: yhcM [H]

Synonym: ECH_0392

Alternate gene names: 88658545

Gene position: 387085-388140 (Clockwise)

Preceding gene: 88657675

Following gene: 88657943

Centisome position: 32.91

GC content: 29.73

Gene sequence:

>1056_bases
ATGAAAGAAATTTTTGATCACTATTATTCTATGGTGGATAGTGGTAAAATCACTTATGATGAGCAGCAAGTTAAGCTATT
AAACGAATTAACACCATATTTATCTGTTGAGAAAATTTGTTGCTTTTTGCCTATAAAAAAGAGACTACAGAAGGTTGGGG
TATACATATATGGAGAAGTAGGCAGAGGGAAGTCTATGATTACAGATATATATTATAATGCTTGTAAAATAGAAAGGAAG
AAACGACAACATTTCAATCAGTTTATGAAGACAGTGCATACTTTATTACATGAGTTTAAATCATCTCGTGTCAAAGATCC
ACTGCATAAAGTTGCTAAAACAATGGTTCATGGTGTAGATTTATTATGTCTAGATGAAATACAGGTATATGATATTTGTG
ATGCTATGATATTGGGTCGATTATTTTCTATTATTTTTGATCAGAAAGTTATTGTTATGATGACTTCAAATTATGCTCCT
GTAGATCTGTATCAGGATGGTATTCAAAGGCAATCTTTTGAATCTACAATATCATTAATAATTGAGAGAATGTGTGTTGT
ACATTTATCTGGTAAACAAGACTATCGGGCTATTAAGGATTTAGGGATAAGTGATATATATTTTATAGGAGATGATTCTT
ATATAAAGTTATCTCAATTGTTTTTTGAAATGGCAAATGGTAGGAGGGTAGAACCTGTAACATTACATGTTTGTAGGAGA
AATATTAAAGTGAATAAAACTTTTGATAATGTTGCATGGTTTGATTTTGATGAGTTATGTGGAAAAGCATTATGGGTATC
AGATTATCAGGAAATAGTACGTAATTTTTCAGTAATATTTATTGCAAATATTCCTGTGTTTAATCATTATAATCAAAATG
AGATGCGTAGATTTACTATTTTAATAGATGAATTATATGAAAACAAAGTTAAAATTTTTTGTTCTCTTGCTGTAGAGCCT
AAGTTGTTATATTACTTGCAAGAGGTACCTGTGGATTTTCAACGTACTATTTCGCGTTTAATGGAAATGCGGTCACCATC
TTACTATAATATTTAA

Upstream 100 bases:

>100_bases
TTTATTCTAAATATAGAATGAAGTATTGAAAGTAATAAATGTGGTTTTTTATATAAATTTTCTTAAAAAGTGTGCTAATG
TTTTATGAATAATGAAAAAA

Downstream 100 bases:

>100_bases
GTTGTTATAAATTATGTTTTTTATTGTTAGAAATACTTAGCATTGTTTAGTAAGCATTTATGTAGATTGATAAATAAGAT
CATTTTTATTATGTTGTTTA

Product: AFG1 family ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MKEIFDHYYSMVDSGKITYDEQQVKLLNELTPYLSVEKICCFLPIKKRLQKVGVYIYGEVGRGKSMITDIYYNACKIERK
KRQHFNQFMKTVHTLLHEFKSSRVKDPLHKVAKTMVHGVDLLCLDEIQVYDICDAMILGRLFSIIFDQKVIVMMTSNYAP
VDLYQDGIQRQSFESTISLIIERMCVVHLSGKQDYRAIKDLGISDIYFIGDDSYIKLSQLFFEMANGRRVEPVTLHVCRR
NIKVNKTFDNVAWFDFDELCGKALWVSDYQEIVRNFSVIFIANIPVFNHYNQNEMRRFTILIDELYENKVKIFCSLAVEP
KLLYYLQEVPVDFQRTISRLMEMRSPSYYNI

Sequences:

>Translated_351_residues
MKEIFDHYYSMVDSGKITYDEQQVKLLNELTPYLSVEKICCFLPIKKRLQKVGVYIYGEVGRGKSMITDIYYNACKIERK
KRQHFNQFMKTVHTLLHEFKSSRVKDPLHKVAKTMVHGVDLLCLDEIQVYDICDAMILGRLFSIIFDQKVIVMMTSNYAP
VDLYQDGIQRQSFESTISLIIERMCVVHLSGKQDYRAIKDLGISDIYFIGDDSYIKLSQLFFEMANGRRVEPVTLHVCRR
NIKVNKTFDNVAWFDFDELCGKALWVSDYQEIVRNFSVIFIANIPVFNHYNQNEMRRFTILIDELYENKVKIFCSLAVEP
KLLYYLQEVPVDFQRTISRLMEMRSPSYYNI
>Mature_351_residues
MKEIFDHYYSMVDSGKITYDEQQVKLLNELTPYLSVEKICCFLPIKKRLQKVGVYIYGEVGRGKSMITDIYYNACKIERK
KRQHFNQFMKTVHTLLHEFKSSRVKDPLHKVAKTMVHGVDLLCLDEIQVYDICDAMILGRLFSIIFDQKVIVMMTSNYAP
VDLYQDGIQRQSFESTISLIIERMCVVHLSGKQDYRAIKDLGISDIYFIGDDSYIKLSQLFFEMANGRRVEPVTLHVCRR
NIKVNKTFDNVAWFDFDELCGKALWVSDYQEIVRNFSVIFIANIPVFNHYNQNEMRRFTILIDELYENKVKIFCSLAVEP
KLLYYLQEVPVDFQRTISRLMEMRSPSYYNI

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=400, Percent_Identity=34, Blast_Score=207, Evalue=1e-53,
Organism=Escherichia coli, GI1789627, Length=298, Percent_Identity=33.2214765100671, Blast_Score=176, Evalue=2e-45,
Organism=Caenorhabditis elegans, GI17505769, Length=282, Percent_Identity=36.1702127659575, Blast_Score=191, Evalue=7e-49,
Organism=Saccharomyces cerevisiae, GI6320783, Length=337, Percent_Identity=32.6409495548961, Blast_Score=154, Evalue=2e-38,
Organism=Drosophila melanogaster, GI20129913, Length=344, Percent_Identity=32.8488372093023, Blast_Score=169, Evalue=3e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 41392; Mature: 41392

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEIFDHYYSMVDSGKITYDEQQVKLLNELTPYLSVEKICCFLPIKKRLQKVGVYIYGEV
CHHHHHHHHHHHCCCCCEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCEEEEEEC
GRGKSMITDIYYNACKIERKKRQHFNQFMKTVHTLLHEFKSSRVKDPLHKVAKTMVHGVD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
LLCLDEIQVYDICDAMILGRLFSIIFDQKVIVMMTSNYAPVDLYQDGIQRQSFESTISLI
EEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
IERMCVVHLSGKQDYRAIKDLGISDIYFIGDDSYIKLSQLFFEMANGRRVEPVTLHVCRR
HHHHHHHEECCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEHEEHHC
NIKVNKTFDNVAWFDFDELCGKALWVSDYQEIVRNFSVIFIANIPVFNHYNQNEMRRFTI
CCEEECCCCCCEECCHHHHHCCCEEHHHHHHHHHCCCEEEEECCCEECCCCHHHHHHHHH
LIDELYENKVKIFCSLAVEPKLLYYLQEVPVDFQRTISRLMEMRSPSYYNI
HHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKEIFDHYYSMVDSGKITYDEQQVKLLNELTPYLSVEKICCFLPIKKRLQKVGVYIYGEV
CHHHHHHHHHHHCCCCCEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCEEEEEEC
GRGKSMITDIYYNACKIERKKRQHFNQFMKTVHTLLHEFKSSRVKDPLHKVAKTMVHGVD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
LLCLDEIQVYDICDAMILGRLFSIIFDQKVIVMMTSNYAPVDLYQDGIQRQSFESTISLI
EEEECCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH
IERMCVVHLSGKQDYRAIKDLGISDIYFIGDDSYIKLSQLFFEMANGRRVEPVTLHVCRR
HHHHHHHEECCCHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCEEHEEHHC
NIKVNKTFDNVAWFDFDELCGKALWVSDYQEIVRNFSVIFIANIPVFNHYNQNEMRRFTI
CCEEECCCCCCEECCHHHHHCCCEEHHHHHHHHHCCCEEEEECCCEECCCCHHHHHHHHH
LIDELYENKVKIFCSLAVEPKLLYYLQEVPVDFQRTISRLMEMRSPSYYNI
HHHHHHCCCEEEEEEECCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]