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The map label for this gene is 88658493

Identifier: 88658493

GI number: 88658493

Start: 192635

End: 193195

Strand: Direct

Name: 88658493

Synonym: ECH_0202

Alternate gene names: NA

Gene position: 192635-193195 (Clockwise)

Preceding gene: 88658047

Following gene: 88657629

Centisome position: 16.38

GC content: 31.91

Gene sequence:

>561_bases
ATGTTTATACAAATTGGGGAGACTCCAAATCCTAATACTTTAAAATTTATGCCAGGTATGCCTATTAATAATGGTAAGGT
TAGTGAATTTGCTGATAGTGTGGCAGCTGAAGGTTCTTCTCTTGCAACAGCATTATTCAAAATTGAATATGTAAAAAGTG
TATTTTTTGGAGGTGATTTCGTTTCAGTAACAAAATCTGATGATATTGAGTGGGATGTTTTGAAACCAGAAATTTTGACA
GTAATTATGGAATTTCTAACACTTAATTCGGATAATGCTACTGAAAGTTTTGATCAGGAAGAACTGGAAGAGTTTTTTGA
TGAAAAAGATATTGAAATGGTTGGTAAAATTAAAGAGTTAATAGATAATTATGTAAAACCTGCTGTTATCCAAGATGGTG
GAGATATAAAGTTTAAAGGATACAGTAATGGTATTGTTTTTGTAAAATTGAGAGGAGCATGTTCAGGGTGTCCAAGTGCC
TCAATTACTCTGAAAGAAGGTATATATAATATGTTGAGCTATTATATTCCGGATATACAAGGTGTAGAGAGTATTCAGTA
G

Upstream 100 bases:

>100_bases
GAATATTACTAGAAAGATAAACCACATATAAATGACTTGATTTAAGTAAGGTATCTACATATTATACAAGTTAAAAGTAT
TTTTTTGCAAATGGTTTATT

Downstream 100 bases:

>100_bases
AAATAGAATATATTAGTTTTGCTGTTGTGTTGGAAAGTACTTTTTAAGTTTTTAAGTCTATAAGATTATCTGTATAAGCG
TTTAATTCTACTAGCGGTAA

Product: NifU domain-containing protein

Products: NA

Alternate protein names: NifU Domain Protein; Nitrogen-Fixing NifU Domain Protein; Nitrogen-Fixing NifU-Like; NifU Domain-Containing Protein; Nitrogen Fixation Protein; NifU Related Protein; NifU-Like Protein; NifU-Like Domain Protein; NifU-Like Domain-Containing Protein; NifU Protein; Nitrogen-Fixing NifU-Like Protein; Scaffold Protein Nfu/Nifu; NifU Family Protein; Thioredoxin-Like Protein; Nitrogen-Fixing NifU; NifU Iron-Sulphur Cluster Scaffold Protein; Nif System Fes Cluster Assembly Nifu Family Protein; Thioredoxin-Related Protein; Thioredoxin-Like Domain Protein; Scaffold Protein Nfu/NifU N Terminal Domain Protein; Nitrogen-Fixing Nifu Domain Protein; Nitrogen-Fixing Protein NifU; Nitrogen-Fixing NifU Domain-Containing Protein; Nitrogen Fixing Thioredoxin-Like Protein NifU; Nitrogen-Fixing Protein; NFU1 Iron-Sulfur Cluster Scaffold-Like Protein; Fe-S Cluster Assembly Protein NFU; NifU Domain Containing Protein; HIRA-Interacting; Nitrogen-Fixing NifU C-Terminal; Scaffold Protein Nfu/NifU-Like Protein; Scaffold Protein Nfu/NifU N Terminal; NitrogeN-Fixing Nifu Domain Protein; Thioredoxin

Number of amino acids: Translated: 186; Mature: 186

Protein sequence:

>186_residues
MFIQIGETPNPNTLKFMPGMPINNGKVSEFADSVAAEGSSLATALFKIEYVKSVFFGGDFVSVTKSDDIEWDVLKPEILT
VIMEFLTLNSDNATESFDQEELEEFFDEKDIEMVGKIKELIDNYVKPAVIQDGGDIKFKGYSNGIVFVKLRGACSGCPSA
SITLKEGIYNMLSYYIPDIQGVESIQ

Sequences:

>Translated_186_residues
MFIQIGETPNPNTLKFMPGMPINNGKVSEFADSVAAEGSSLATALFKIEYVKSVFFGGDFVSVTKSDDIEWDVLKPEILT
VIMEFLTLNSDNATESFDQEELEEFFDEKDIEMVGKIKELIDNYVKPAVIQDGGDIKFKGYSNGIVFVKLRGACSGCPSA
SITLKEGIYNMLSYYIPDIQGVESIQ
>Mature_186_residues
MFIQIGETPNPNTLKFMPGMPINNGKVSEFADSVAAEGSSLATALFKIEYVKSVFFGGDFVSVTKSDDIEWDVLKPEILT
VIMEFLTLNSDNATESFDQEELEEFFDEKDIEMVGKIKELIDNYVKPAVIQDGGDIKFKGYSNGIVFVKLRGACSGCPSA
SITLKEGIYNMLSYYIPDIQGVESIQ

Specific function: Unknown

COG id: COG0694

COG function: function code O; Thioredoxin-like proteins and domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI50593021, Length=186, Percent_Identity=48.3870967741936, Blast_Score=182, Evalue=1e-46,
Organism=Homo sapiens, GI50593025, Length=186, Percent_Identity=48.3870967741936, Blast_Score=182, Evalue=2e-46,
Organism=Homo sapiens, GI50593023, Length=78, Percent_Identity=53.8461538461538, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI50593019, Length=78, Percent_Identity=53.8461538461538, Blast_Score=100, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17541876, Length=188, Percent_Identity=41.4893617021277, Blast_Score=159, Evalue=1e-39,
Organism=Saccharomyces cerevisiae, GI6322811, Length=203, Percent_Identity=32.0197044334975, Blast_Score=107, Evalue=1e-24,
Organism=Drosophila melanogaster, GI45551492, Length=189, Percent_Identity=44.973544973545, Blast_Score=173, Evalue=7e-44,
Organism=Drosophila melanogaster, GI24643765, Length=189, Percent_Identity=44.973544973545, Blast_Score=173, Evalue=7e-44,
Organism=Drosophila melanogaster, GI45556188, Length=189, Percent_Identity=44.973544973545, Blast_Score=173, Evalue=7e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20570; Mature: 20570

Theoretical pI: Translated: 4.03; Mature: 4.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIQIGETPNPNTLKFMPGMPINNGKVSEFADSVAAEGSSLATALFKIEYVKSVFFGGDF
CEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCE
VSVTKSDDIEWDVLKPEILTVIMEFLTLNSDNATESFDQEELEEFFDEKDIEMVGKIKEL
EEEECCCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
IDNYVKPAVIQDGGDIKFKGYSNGIVFVKLRGACSGCPSASITLKEGIYNMLSYYIPDIQ
HHHHCCCEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHCCCCC
GVESIQ
CCCCCC
>Mature Secondary Structure
MFIQIGETPNPNTLKFMPGMPINNGKVSEFADSVAAEGSSLATALFKIEYVKSVFFGGDF
CEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCE
VSVTKSDDIEWDVLKPEILTVIMEFLTLNSDNATESFDQEELEEFFDEKDIEMVGKIKEL
EEEECCCCCEEEEECHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
IDNYVKPAVIQDGGDIKFKGYSNGIVFVKLRGACSGCPSASITLKEGIYNMLSYYIPDIQ
HHHHCCCEEEECCCCEEEEEECCCEEEEEECCCCCCCCCCCEEHHHHHHHHHHHHCCCCC
GVESIQ
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA