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The map label for this gene is p28-1 [H]

Identifier: 88658427

GI number: 88658427

Start: 1165215

End: 1166030

Strand: Reverse

Name: p28-1 [H]

Synonym: ECH_1144

Alternate gene names: 88658427

Gene position: 1166030-1165215 (Counterclockwise)

Preceding gene: 88658380

Following gene: 88657898

Centisome position: 99.13

GC content: 34.07

Gene sequence:

>816_bases
ATGAATTACAAAAAATTTGTTGTAGGTGTTGCATTGGCTACATTGCTTTCTTTCTTGCCTGATAATTCTTTTTCTGATGC
AAACGTTCCTGAAGGGAGAAAGGGATTTTATGTAGGTACTCAATATAAAGTTGGTGTTCCTAATTTCAGTAATTTTTCAG
CTGAAGAAACACTTCCTGGACTCACAAAAAGTATTTTTGCTTTAGGCCTTGATAAATCTAGCATTAGTGACCATGCAGGT
TTTACACAAGCGTATAATCCTACATATGCAAGCAATTTTGCTGGGTTTGGTGGTGTTATTGGATATTATGTTAATGATTT
TAGAGTAGAGTTTGAAGGTGCTTATGAAAATTTTGAACCCGAAAGACAGTGGTATCCTGAAGGAGGAGAAAGCCATAAGT
TTTTTGCTCTATCTCGTGAGTCCACTGTTCAAGATAATAAGTTTATAGTGTTAGAAAATGATGGTGTTATTGATAAATCT
CTTAATGTGAACTTTTGTTATGATATTGCTCATGGTAGTATTCCTTTAGCACCATATATGTGTGCTGGTGTTGGAGCAGA
TTACATAAAATTTTTGGGAATATCATTGCCTAAATTTTCTTATCAAGTGAAATTTGGGGTTAACTATCCTGTGAGTGTTA
ATGTTATGTTATTTGGTGGAGGTTATTATCATAAGGTTATAGGTAATAGGTATGAAAGAGTAGAAATAGCTTATCATCCT
GCCACATTAACGAATGTGCCTAAAACTACTTCAGCATCTGCTACTTTAGATACTGATTATTTTGGTTGGGAAGTTGGTAT
GAGATTTACACTATAG

Upstream 100 bases:

>100_bases
CATTTATTATGTAATAAGTGGAATTGTGTACAATTACTTGACTTGGCATGGTTTGTCATAGTAAATTACCATAGTTTACC
TTGTTATTAATGGATGTAAG

Downstream 100 bases:

>100_bases
GATTTTATAAACATAAATTTTTTGTCCTTATATTGTATAATAAGACTTTACATTACAGTTTGTTTTGGTTAATTGGAACT
TCTAATTTTGGTGTTTGGTG

Product: major outer membrane protein P28-1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MNYKKFVVGVALATLLSFLPDNSFSDANVPEGRKGFYVGTQYKVGVPNFSNFSAEETLPGLTKSIFALGLDKSSISDHAG
FTQAYNPTYASNFAGFGGVIGYYVNDFRVEFEGAYENFEPERQWYPEGGESHKFFALSRESTVQDNKFIVLENDGVIDKS
LNVNFCYDIAHGSIPLAPYMCAGVGADYIKFLGISLPKFSYQVKFGVNYPVSVNVMLFGGGYYHKVIGNRYERVEIAYHP
ATLTNVPKTTSASATLDTDYFGWEVGMRFTL

Sequences:

>Translated_271_residues
MNYKKFVVGVALATLLSFLPDNSFSDANVPEGRKGFYVGTQYKVGVPNFSNFSAEETLPGLTKSIFALGLDKSSISDHAG
FTQAYNPTYASNFAGFGGVIGYYVNDFRVEFEGAYENFEPERQWYPEGGESHKFFALSRESTVQDNKFIVLENDGVIDKS
LNVNFCYDIAHGSIPLAPYMCAGVGADYIKFLGISLPKFSYQVKFGVNYPVSVNVMLFGGGYYHKVIGNRYERVEIAYHP
ATLTNVPKTTSASATLDTDYFGWEVGMRFTL
>Mature_271_residues
MNYKKFVVGVALATLLSFLPDNSFSDANVPEGRKGFYVGTQYKVGVPNFSNFSAEETLPGLTKSIFALGLDKSSISDHAG
FTQAYNPTYASNFAGFGGVIGYYVNDFRVEFEGAYENFEPERQWYPEGGESHKFFALSRESTVQDNKFIVLENDGVIDKS
LNVNFCYDIAHGSIPLAPYMCAGVGADYIKFLGISLPKFSYQVKFGVNYPVSVNVMLFGGGYYHKVIGNRYERVEIAYHP
ATLTNVPKTTSASATLDTDYFGWEVGMRFTL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen msp4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR002566 [H]

Pfam domain/function: PF01617 Surface_Ag_2 [H]

EC number: NA

Molecular weight: Translated: 30050; Mature: 30050

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYKKFVVGVALATLLSFLPDNSFSDANVPEGRKGFYVGTQYKVGVPNFSNFSAEETLPG
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCEEEECCCCCCCCCHHHHCCH
LTKSIFALGLDKSSISDHAGFTQAYNPTYASNFAGFGGVIGYYVNDFRVEFEGAYENFEP
HHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCEEEEEEEEEEEEEECCCCCCCC
ERQWYPEGGESHKFFALSRESTVQDNKFIVLENDGVIDKSLNVNFCYDIAHGSIPLAPYM
CHHCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCEECCCCCEEEEEECCCCCCCCHHH
CAGVGADYIKFLGISLPKFSYQVKFGVNYPVSVNVMLFGGGYYHKVIGNRYERVEIAYHP
HHCCCHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEEECCCEEEHHHCCCEEEEEEEECC
ATLTNVPKTTSASATLDTDYFGWEVGMRFTL
CEECCCCCCCCCCEEECCCCCEEEEEEEEEC
>Mature Secondary Structure
MNYKKFVVGVALATLLSFLPDNSFSDANVPEGRKGFYVGTQYKVGVPNFSNFSAEETLPG
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCEEEECCCCCCCCCHHHHCCH
LTKSIFALGLDKSSISDHAGFTQAYNPTYASNFAGFGGVIGYYVNDFRVEFEGAYENFEP
HHHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCEEEEEEEEEEEEEECCCCCCCC
ERQWYPEGGESHKFFALSRESTVQDNKFIVLENDGVIDKSLNVNFCYDIAHGSIPLAPYM
CHHCCCCCCCCCEEEEECCCCCCCCCEEEEEECCCCEECCCCCEEEEEECCCCCCCCHHH
CAGVGADYIKFLGISLPKFSYQVKFGVNYPVSVNVMLFGGGYYHKVIGNRYERVEIAYHP
HHCCCHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEEECCCEEEHHHCCCEEEEEEEECC
ATLTNVPKTTSASATLDTDYFGWEVGMRFTL
CEECCCCCCCCCCEEECCCCCEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8294020 [H]