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The map label for this gene is yjcF [C]

Identifier: 88658408

GI number: 88658408

Start: 1109879

End: 1111702

Strand: Direct

Name: yjcF [C]

Synonym: ECH_1083

Alternate gene names: 88658408

Gene position: 1109879-1111702 (Clockwise)

Preceding gene: 88658651

Following gene: 88658166

Centisome position: 94.36

GC content: 27.47

Gene sequence:

>1824_bases
ATGAAGCATTGTATAAAACACACTTTTACAGTTTTAATAATATATACATTACTTTTGAACACTAATATATGTTTTGCCCA
TACGACAGATCAAGATAATTTTTTTACTGTAAAACGCACTTCTTATACTAAAGAAGATTTTGTAAGCTTCATAGTAAAAT
GTCATGCTAAAGGAATACCTTTAGATTTCAAGAAGGAATTCGGCAATAATTTATCTGGAGCAGATTTTAGTGATCTAGAC
CTTCGAGGATCAGTATTTGATAACGTTAACCTACTACATGCAAATTTTACTAGAGCTAACTTATCCAATTCCACTTTTAT
AGATTCCAATATGCAAGGAGCATCCTTCATTAATGCAAACTTAAGTAAATCCAACATAAAAAATTCAAACTTAAATTTTG
CCAATTTCACATCTGCAGATTTACAAAAAACTACAATTACACAATCAAAAATCAACAATACAAACTTTAGTTACTCAGAC
ATGCGCTTTTCTATTCTAACAGAAGTCAATGGATCCCTTGCAAACTTTTCTGAAACAGAATTAAAACTAGTTTCAATATT
CAACTCTAATATAGAAAAAGCAAATTTTCATGACATTGAAGGTGAAAATATAGTAATCCAAAATTGTAATTTACTAGATT
CAAACTTTTTTGGAGCAAATTTAAATAATTCAAAAATTCAATTTTCAAATCTCACAAATACTATCCTATACGCAGTAAAT
CTAGATTCATCAGATATAACAGGAAGTAACCTAAGTAATAGCAACATGGAAGTATCAAATATTTCTTTTGCTAATTTTCA
CAATGCTAATTTAAGCAATACAAACATGCATCTTGTAGATGCTCATTATACAAATCTTAATAATACAAATTTACATAAAG
TTCGTATGAGTGATGCAACTCTAATTGGAGTAAATTTAAATCATGCTGTGTTATCTAACGCAGATTTGAGCAACGCAGAT
TTAAGCAATGTCAGCATAGAAGAATCAGATATGCAAGAAATACTTCTTGACTCTACTAATATTACAAGAACGAATATGAA
GCATGCTATTTTAAATAACGCAACTATTAATAATACAGTTATTTCAAATTCTGACCTTACGATGACATTAATAAAAGATT
CTAAATGGAATAACTCTAGTATCTATTCAAGCAAATTAACCTCTGCAGTTATAGATAACAACATTATTAAACATGGTACA
TATGATAAAGTAAATGCAACAAATACATTATGGTCTAATTCAACAATAGAAGATAGCAACATAATTTTCTGCAATTTTGA
ATCTGCAATATTCAATAATGATAAAATACATAAAGTGAGCTTTTTTACAAATCACTTAGAATCCGCAAAAGTAGAAGATT
CAAACATAGTCGGATCTAGCATTTACAAAAATACTCTCACCAATTTCATAATTAATAATTGTGACATTAAAAATACAATC
ATTATCAACAATAAGAATTTTGTACCAACAGAATTTTCTAAACAGGCAATTACATCTATTACAGCTTTACAAGACGCTAT
CACAAACAATAAAGTATTTGATGTCAATTTTTCTAATTTTGATTTTAGAAAAATAAACTTAAACAATGCAAATTTTTCAA
ACTCTATATTAAAGAATGCAAACTTTTCAGGATCACAATTAGAAAACGTAAATTTTACTAACACAAATCTACAATCTTCT
CAATTTGAAAACTCACAACTTAAAAATGTAGATTTTTCTAATGCAAATTTAGAAAACGCGAACTTATCGAACAGTAAATT
AAATGATATCAACACATACAAAACAAATTTGCGTCACGTAAAAACTGACAATACTCAGAAATAA

Upstream 100 bases:

>100_bases
ATCTAAAAAAATATACAATAGCAAAACTAACATTAACAATTTTATGAGATTTATTACTTATAATAAGCTAAACTACATTG
TCAACCTATACAAGTATACT

Downstream 100 bases:

>100_bases
ATAAAGATTTAAACTTATACACTAAAACAACATCAAATAATTTTATAGATTGTAATAACATATGATTCAGTTACATATCT
TCAACTATCGCAAATCTACC

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 607; Mature: 607

Protein sequence:

>607_residues
MKHCIKHTFTVLIIYTLLLNTNICFAHTTDQDNFFTVKRTSYTKEDFVSFIVKCHAKGIPLDFKKEFGNNLSGADFSDLD
LRGSVFDNVNLLHANFTRANLSNSTFIDSNMQGASFINANLSKSNIKNSNLNFANFTSADLQKTTITQSKINNTNFSYSD
MRFSILTEVNGSLANFSETELKLVSIFNSNIEKANFHDIEGENIVIQNCNLLDSNFFGANLNNSKIQFSNLTNTILYAVN
LDSSDITGSNLSNSNMEVSNISFANFHNANLSNTNMHLVDAHYTNLNNTNLHKVRMSDATLIGVNLNHAVLSNADLSNAD
LSNVSIEESDMQEILLDSTNITRTNMKHAILNNATINNTVISNSDLTMTLIKDSKWNNSSIYSSKLTSAVIDNNIIKHGT
YDKVNATNTLWSNSTIEDSNIIFCNFESAIFNNDKIHKVSFFTNHLESAKVEDSNIVGSSIYKNTLTNFIINNCDIKNTI
IINNKNFVPTEFSKQAITSITALQDAITNNKVFDVNFSNFDFRKINLNNANFSNSILKNANFSGSQLENVNFTNTNLQSS
QFENSQLKNVDFSNANLENANLSNSKLNDINTYKTNLRHVKTDNTQK

Sequences:

>Translated_607_residues
MKHCIKHTFTVLIIYTLLLNTNICFAHTTDQDNFFTVKRTSYTKEDFVSFIVKCHAKGIPLDFKKEFGNNLSGADFSDLD
LRGSVFDNVNLLHANFTRANLSNSTFIDSNMQGASFINANLSKSNIKNSNLNFANFTSADLQKTTITQSKINNTNFSYSD
MRFSILTEVNGSLANFSETELKLVSIFNSNIEKANFHDIEGENIVIQNCNLLDSNFFGANLNNSKIQFSNLTNTILYAVN
LDSSDITGSNLSNSNMEVSNISFANFHNANLSNTNMHLVDAHYTNLNNTNLHKVRMSDATLIGVNLNHAVLSNADLSNAD
LSNVSIEESDMQEILLDSTNITRTNMKHAILNNATINNTVISNSDLTMTLIKDSKWNNSSIYSSKLTSAVIDNNIIKHGT
YDKVNATNTLWSNSTIEDSNIIFCNFESAIFNNDKIHKVSFFTNHLESAKVEDSNIVGSSIYKNTLTNFIINNCDIKNTI
IINNKNFVPTEFSKQAITSITALQDAITNNKVFDVNFSNFDFRKINLNNANFSNSILKNANFSGSQLENVNFTNTNLQSS
QFENSQLKNVDFSNANLENANLSNSKLNDINTYKTNLRHVKTDNTQK
>Mature_607_residues
MKHCIKHTFTVLIIYTLLLNTNICFAHTTDQDNFFTVKRTSYTKEDFVSFIVKCHAKGIPLDFKKEFGNNLSGADFSDLD
LRGSVFDNVNLLHANFTRANLSNSTFIDSNMQGASFINANLSKSNIKNSNLNFANFTSADLQKTTITQSKINNTNFSYSD
MRFSILTEVNGSLANFSETELKLVSIFNSNIEKANFHDIEGENIVIQNCNLLDSNFFGANLNNSKIQFSNLTNTILYAVN
LDSSDITGSNLSNSNMEVSNISFANFHNANLSNTNMHLVDAHYTNLNNTNLHKVRMSDATLIGVNLNHAVLSNADLSNAD
LSNVSIEESDMQEILLDSTNITRTNMKHAILNNATINNTVISNSDLTMTLIKDSKWNNSSIYSSKLTSAVIDNNIIKHGT
YDKVNATNTLWSNSTIEDSNIIFCNFESAIFNNDKIHKVSFFTNHLESAKVEDSNIVGSSIYKNTLTNFIINNCDIKNTI
IINNKNFVPTEFSKQAITSITALQDAITNNKVFDVNFSNFDFRKINLNNANFSNSILKNANFSGSQLENVNFTNTNLQSS
QFENSQLKNVDFSNANLENANLSNSKLNDINTYKTNLRHVKTDNTQK

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Escherichia coli, GI1790502, Length=255, Percent_Identity=27.0588235294118, Blast_Score=62, Evalue=1e-10,
Organism=Drosophila melanogaster, GI221377802, Length=191, Percent_Identity=25.6544502617801, Blast_Score=66, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 67858; Mature: 67858

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHCIKHTFTVLIIYTLLLNTNICFAHTTDQDNFFTVKRTSYTKEDFVSFIVKCHAKGIP
CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHCCCCC
LDFKKEFGNNLSGADFSDLDLRGSVFDNVNLLHANFTRANLSNSTFIDSNMQGASFINAN
CCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECEECCCCCCEEECCCCCCCEEEECC
LSKSNIKNSNLNFANFTSADLQKTTITQSKINNTNFSYSDMRFSILTEVNGSLANFSETE
CCCCCCCCCCCCEEECCCCCCCCEEEEHHHCCCCCCEECCEEEEEEEECCCCCCCCCHHH
LKLVSIFNSNIEKANFHDIEGENIVIQNCNLLDSNFFGANLNNSKIQFSNLTNTILYAVN
EEEEEEECCCCCCCCCCCCCCCEEEEEECCEECCCCCCCCCCCCEEEEECCCCEEEEEEE
LDSSDITGSNLSNSNMEVSNISFANFHNANLSNTNMHLVDAHYTNLNNTNLHKVRMSDAT
CCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCEEEEEECCEE
LIGVNLNHAVLSNADLSNADLSNVSIEESDMQEILLDSTNITRTNMKHAILNNATINNTV
EEEEECCHHEECCCCCCCCCCCCCEECHHHHHHHHHCCCCCCCCCCHHHHCCCCEECCEE
ISNSDLTMTLIKDSKWNNSSIYSSKLTSAVIDNNIIKHGTYDKVNATNTLWSNSTIEDSN
EECCCEEEEEEECCCCCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCC
IIFCNFESAIFNNDKIHKVSFFTNHLESAKVEDSNIVGSSIYKNTLTNFIINNCDIKNTI
EEEEECCHHHCCCCCEEEEEEEHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEE
IINNKNFVPTEFSKQAITSITALQDAITNNKVFDVNFSNFDFRKINLNNANFSNSILKNA
EECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCHHHHHCC
NFSGSQLENVNFTNTNLQSSQFENSQLKNVDFSNANLENANLSNSKLNDINTYKTNLRHV
CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCEEE
KTDNTQK
CCCCCCC
>Mature Secondary Structure
MKHCIKHTFTVLIIYTLLLNTNICFAHTTDQDNFFTVKRTSYTKEDFVSFIVKCHAKGIP
CCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHCCCCC
LDFKKEFGNNLSGADFSDLDLRGSVFDNVNLLHANFTRANLSNSTFIDSNMQGASFINAN
CCHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEECEECCCCCCEEECCCCCCCEEEECC
LSKSNIKNSNLNFANFTSADLQKTTITQSKINNTNFSYSDMRFSILTEVNGSLANFSETE
CCCCCCCCCCCCEEECCCCCCCCEEEEHHHCCCCCCEECCEEEEEEEECCCCCCCCCHHH
LKLVSIFNSNIEKANFHDIEGENIVIQNCNLLDSNFFGANLNNSKIQFSNLTNTILYAVN
EEEEEEECCCCCCCCCCCCCCCEEEEEECCEECCCCCCCCCCCCEEEEECCCCEEEEEEE
LDSSDITGSNLSNSNMEVSNISFANFHNANLSNTNMHLVDAHYTNLNNTNLHKVRMSDAT
CCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCEEEEEEEEECCCCCCCEEEEEECCEE
LIGVNLNHAVLSNADLSNADLSNVSIEESDMQEILLDSTNITRTNMKHAILNNATINNTV
EEEEECCHHEECCCCCCCCCCCCCEECHHHHHHHHHCCCCCCCCCCHHHHCCCCEECCEE
ISNSDLTMTLIKDSKWNNSSIYSSKLTSAVIDNNIIKHGTYDKVNATNTLWSNSTIEDSN
EECCCEEEEEEECCCCCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCC
IIFCNFESAIFNNDKIHKVSFFTNHLESAKVEDSNIVGSSIYKNTLTNFIINNCDIKNTI
EEEEECCHHHCCCCCEEEEEEEHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEE
IINNKNFVPTEFSKQAITSITALQDAITNNKVFDVNFSNFDFRKINLNNANFSNSILKNA
EECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEECCCCCCCHHHHHCC
NFSGSQLENVNFTNTNLQSSQFENSQLKNVDFSNANLENANLSNSKLNDINTYKTNLRHV
CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCEEE
KTDNTQK
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA