Click here to switch to the map view.

The map label for this gene is omp85 [H]

Identifier: 88658234

GI number: 88658234

Start: 1099889

End: 1102210

Strand: Direct

Name: omp85 [H]

Synonym: ECH_1071

Alternate gene names: 88658234

Gene position: 1099889-1102210 (Clockwise)

Preceding gene: 88658328

Following gene: 88657746

Centisome position: 93.51

GC content: 29.5

Gene sequence:

>2322_bases
ATGAGATACATTATTATTATTTTAATATTATTTACTTCTTCTCTTGCACATGCAGAGGCTTTAAATACTAAAATTAAGCA
AGTTCAAATCAATGGCAACCATAGGTTAGATTACAAAACTATATATTTTTACTCAAAAATTAACTTACAAGATAATGTAA
CACAAGAGACTATAGATCAAATCATTAAAAACTTACATTCAACACAACTATTTTCACATATAGAAGTATATGTTAATCAG
GATAATTACTTAGTAATCAATGTAACAGAAAATCCTGTCATCAATAATATAGTTTTCTATGGAAACAAAGAATTCAGTAA
AAAAGATCTCGTAAATGATATCTTAAAATTAAAAAAGTTAGCAGTTTTTACAAAATCAAAATTACAGCAAGATATATCAA
ATCTTTTATCACTATACCAAAGCAAAGGTAAGTTAAGCGCAAAAGTTACCTATGAAGTAAAAGAACTTGAGAATAATAAA
ATAGATATCATTATAAAAATAAATGAAGGACCAACATCAAGAATAAAAATTATTAAATTTACTGGAAATCAGTTCTTTTC
AGATGCAATGTTAAAAAAAGCTATACAATCAAGTGAATACTATCCTTATAAAATATTCAGTAGTAATACAAAATTTGCTT
CTGAAAGATTAATGCTTGATCAAGCAGGATTATATAACTTTTACACATCTAAAGGTTTTATAGACTTTAAGATTAAATCT
GTAGTACCAGAAATTAGAGAAGATCATAATATTAATCTTATTTTCGCTGTTGAAGAAGGGATAAGGTATAAGTTTGGTAA
TAGTAACATCATCATAGATAAACAAGTTAGTAATCACCAACAACTAAAAGAAGAAATTCAGAATCTTATATTATCAAAAA
GTGGTGATACATTTAACCGAGAATCCATTAATAATTCTATCGAAAAAATTACCCAATATTTAAGTAACAATGGAAACTTC
TTTTCAGATATAAAGCATGAATACCGTGTCAAGGATGATGTGGTCGATATAGATTACATAATATATACAGGCAATAAAGT
TTACATTAATAATATAAGTATCACTAACAACAAGACTACTTTAGATCAAGTAATCAGACGAAAGTTGACTATTTCTGAAG
GCGACATATATAATGCCAGCGTCATTAATAGATCTTATAAAAACATATTAGGATTAGGTTTTTTTGAGTCTGTAAATGTA
GAGAATCATAAAATAAATGACAGCTTAGTTGATTTAAATTTTCAAGTTAAAGAAAGAGGTACTGGTACATTTTCTGTATC
AGCAGGATTTTCTAGTGTCACCGGACTTGTAGGTAAAATAAACATACAAGAGAGAAACTTATTTGGAACTGGAAAAATAT
TGTCTTTACAAGCAGAAAAATCTACTTCTTCCTTATCTAGCAGCATTGATTTTGTAGTGCCAAATTTCTCAGAGACTGAT
TCAGCAGTAGGGTTTGGTTTATTCTATTCACATCAGAACAAACCAAAAGGCAAAGATTTTCCAAATCTCATTAACCCAGC
CGCTATTACAGGTAATACAGATGCTGCATTCAGCAGCAGCAACGCTGGTTTCATGTTACATACATCACATGATATAACTG
ATGACCTCAATCTTGCATTGCACTATGCTTACAAACATGTAAACATATTTAATGTTAAAGATACTGCATCTGAATTAATT
AAGGAACAAGCTGGTAAGAATATTGATTCATCCGTTGGTTATTCTCTTCAATTCCGCAAGTTTGATAATTTATCTAAAAT
TAAGGATGGATATCTTGTTAAGCTACATCAAAGCTTTTCCGGATTAGGTGGAACACTACATTACATTAAAACCGAAGGTT
CTGTAAATTATAGCAGAGAGATTCTTCCTAAAGTTAGTAGCGATATCCTTTTAAACATTAAAACTTCTATGGGATATGTA
TTCTCATATAAAAGTGATGAGCAAGTAAAAATCAATCAACGTTTCATAATAGGAAGCAATGAAATCAGAGGATTCCATGT
ATCAGGTATAGGACCAAGAGATAAAAAGACATTAGATGCATTAGGTGGAAAGTTTTACTTTAATATGATTAATCAAGTTG
ATTTTCCTATCGGTTTACCAGACGATTTGGGAATAAAAGGCTCTCTCTTTGTCGATGCAGCAACTTTATTTGGCCTTGAC
TATATAAATAAAGAATATTATGAAGACAAATCACTAAGAGTTTCTGTAGGCTTTGGTATTTCATGGCGTTCTCCATTTGG
ACCAATGAGATTAGATTTTGGCTTCCCTATACTAAAAAAAGACTATGATGTTACAGACATGATAAGATTTTCAATGCAAT
AG

Upstream 100 bases:

>100_bases
AAATATCAGCGGTATATATCTACAATTGGGTTAATGCTTCTGCTATCTTTAATGATTTTTGTCACGTTTAACGATATAAA
AAGTATGTTTAAGTAGTTTT

Downstream 100 bases:

>100_bases
AAAAAAGAGGTATTTATGCAATTAAGGTTATTTTTAGCTATTTTTATATTACTATTCGGTTTAAGTTGCCAAGCTTCGGC
AAAAAATGATCAGAACATCC

Product: OMP85 family outer membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 773; Mature: 773

Protein sequence:

>773_residues
MRYIIIILILFTSSLAHAEALNTKIKQVQINGNHRLDYKTIYFYSKINLQDNVTQETIDQIIKNLHSTQLFSHIEVYVNQ
DNYLVINVTENPVINNIVFYGNKEFSKKDLVNDILKLKKLAVFTKSKLQQDISNLLSLYQSKGKLSAKVTYEVKELENNK
IDIIIKINEGPTSRIKIIKFTGNQFFSDAMLKKAIQSSEYYPYKIFSSNTKFASERLMLDQAGLYNFYTSKGFIDFKIKS
VVPEIREDHNINLIFAVEEGIRYKFGNSNIIIDKQVSNHQQLKEEIQNLILSKSGDTFNRESINNSIEKITQYLSNNGNF
FSDIKHEYRVKDDVVDIDYIIYTGNKVYINNISITNNKTTLDQVIRRKLTISEGDIYNASVINRSYKNILGLGFFESVNV
ENHKINDSLVDLNFQVKERGTGTFSVSAGFSSVTGLVGKINIQERNLFGTGKILSLQAEKSTSSLSSSIDFVVPNFSETD
SAVGFGLFYSHQNKPKGKDFPNLINPAAITGNTDAAFSSSNAGFMLHTSHDITDDLNLALHYAYKHVNIFNVKDTASELI
KEQAGKNIDSSVGYSLQFRKFDNLSKIKDGYLVKLHQSFSGLGGTLHYIKTEGSVNYSREILPKVSSDILLNIKTSMGYV
FSYKSDEQVKINQRFIIGSNEIRGFHVSGIGPRDKKTLDALGGKFYFNMINQVDFPIGLPDDLGIKGSLFVDAATLFGLD
YINKEYYEDKSLRVSVGFGISWRSPFGPMRLDFGFPILKKDYDVTDMIRFSMQ

Sequences:

>Translated_773_residues
MRYIIIILILFTSSLAHAEALNTKIKQVQINGNHRLDYKTIYFYSKINLQDNVTQETIDQIIKNLHSTQLFSHIEVYVNQ
DNYLVINVTENPVINNIVFYGNKEFSKKDLVNDILKLKKLAVFTKSKLQQDISNLLSLYQSKGKLSAKVTYEVKELENNK
IDIIIKINEGPTSRIKIIKFTGNQFFSDAMLKKAIQSSEYYPYKIFSSNTKFASERLMLDQAGLYNFYTSKGFIDFKIKS
VVPEIREDHNINLIFAVEEGIRYKFGNSNIIIDKQVSNHQQLKEEIQNLILSKSGDTFNRESINNSIEKITQYLSNNGNF
FSDIKHEYRVKDDVVDIDYIIYTGNKVYINNISITNNKTTLDQVIRRKLTISEGDIYNASVINRSYKNILGLGFFESVNV
ENHKINDSLVDLNFQVKERGTGTFSVSAGFSSVTGLVGKINIQERNLFGTGKILSLQAEKSTSSLSSSIDFVVPNFSETD
SAVGFGLFYSHQNKPKGKDFPNLINPAAITGNTDAAFSSSNAGFMLHTSHDITDDLNLALHYAYKHVNIFNVKDTASELI
KEQAGKNIDSSVGYSLQFRKFDNLSKIKDGYLVKLHQSFSGLGGTLHYIKTEGSVNYSREILPKVSSDILLNIKTSMGYV
FSYKSDEQVKINQRFIIGSNEIRGFHVSGIGPRDKKTLDALGGKFYFNMINQVDFPIGLPDDLGIKGSLFVDAATLFGLD
YINKEYYEDKSLRVSVGFGISWRSPFGPMRLDFGFPILKKDYDVTDMIRFSMQ
>Mature_773_residues
MRYIIIILILFTSSLAHAEALNTKIKQVQINGNHRLDYKTIYFYSKINLQDNVTQETIDQIIKNLHSTQLFSHIEVYVNQ
DNYLVINVTENPVINNIVFYGNKEFSKKDLVNDILKLKKLAVFTKSKLQQDISNLLSLYQSKGKLSAKVTYEVKELENNK
IDIIIKINEGPTSRIKIIKFTGNQFFSDAMLKKAIQSSEYYPYKIFSSNTKFASERLMLDQAGLYNFYTSKGFIDFKIKS
VVPEIREDHNINLIFAVEEGIRYKFGNSNIIIDKQVSNHQQLKEEIQNLILSKSGDTFNRESINNSIEKITQYLSNNGNF
FSDIKHEYRVKDDVVDIDYIIYTGNKVYINNISITNNKTTLDQVIRRKLTISEGDIYNASVINRSYKNILGLGFFESVNV
ENHKINDSLVDLNFQVKERGTGTFSVSAGFSSVTGLVGKINIQERNLFGTGKILSLQAEKSTSSLSSSIDFVVPNFSETD
SAVGFGLFYSHQNKPKGKDFPNLINPAAITGNTDAAFSSSNAGFMLHTSHDITDDLNLALHYAYKHVNIFNVKDTASELI
KEQAGKNIDSSVGYSLQFRKFDNLSKIKDGYLVKLHQSFSGLGGTLHYIKTEGSVNYSREILPKVSSDILLNIKTSMGYV
FSYKSDEQVKINQRFIIGSNEIRGFHVSGIGPRDKKTLDALGGKFYFNMINQVDFPIGLPDDLGIKGSLFVDAATLFGLD
YINKEYYEDKSLRVSVGFGISWRSPFGPMRLDFGFPILKKDYDVTDMIRFSMQ

Specific function: Unknown

COG id: COG4775

COG function: function code M; Outer membrane protein/protective antigen OMA87

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen D15 family [H]

Homologues:

Organism=Escherichia coli, GI1786374, Length=830, Percent_Identity=22.6506024096386, Blast_Score=184, Evalue=2e-47,

Paralogues:

None

Copy number: 180 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 80 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 220 Molecules/Cell In: Stationary Phase, Ri

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000184
- InterPro:   IPR016474
- InterPro:   IPR010827 [H]

Pfam domain/function: PF01103 Bac_surface_Ag; PF07244 Surf_Ag_VNR [H]

EC number: NA

Molecular weight: Translated: 87602; Mature: 87602

Theoretical pI: Translated: 9.24; Mature: 9.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRYIIIILILFTSSLAHAEALNTKIKQVQINGNHRLDYKTIYFYSKINLQDNVTQETIDQ
CEEEEEEEEHHHCCHHHHHHHCCEEEEEEECCCEEEEEEEEEEEEEECCCCCCCHHHHHH
IIKNLHSTQLFSHIEVYVNQDNYLVINVTENPVINNIVFYGNKEFSKKDLVNDILKLKKL
HHHHHHHHHHEEEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH
AVFTKSKLQQDISNLLSLYQSKGKLSAKVTYEVKELENNKIDIIIKINEGPTSRIKIIKF
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCEEEEEEECCCCCCEEEEEEE
TGNQFFSDAMLKKAIQSSEYYPYKIFSSNTKFASERLMLDQAGLYNFYTSKGFIDFKIKS
ECCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCEEEEEHHH
VVPEIREDHNINLIFAVEEGIRYKFGNSNIIIDKQVSNHQQLKEEIQNLILSKSGDTFNR
HHHHHHCCCCEEEEEEEECCCEEEECCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCH
ESINNSIEKITQYLSNNGNFFSDIKHEYRVKDDVVDIDYIIYTGNKVYINNISITNNKTT
HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEEEEECCEEEEEEEEEECCCHH
LDQVIRRKLTISEGDIYNASVINRSYKNILGLGFFESVNVENHKINDSLVDLNFQVKERG
HHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEEEECC
TGTFSVSAGFSSVTGLVGKINIQERNLFGTGKILSLQAEKSTSSLSSSIDFVVPNFSETD
CEEEEEECCCHHHCCCEEEEEEEECCEECCCCEEEEEECCCHHHHHCCCCEEECCCCCCC
SAVGFGLFYSHQNKPKGKDFPNLINPAAITGNTDAAFSSSNAGFMLHTSHDITDDLNLAL
CCEEEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCHHHEE
HYAYKHVNIFNVKDTASELIKEQAGKNIDSSVGYSLQFRKFDNLSKIKDGYLVKLHQSFS
EEEEEEEEEEECHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHCCCCEEEEEECHHC
GLGGTLHYIKTEGSVNYSREILPKVSSDILLNIKTSMGYVFSYKSDEQVKINQRFIIGSN
CCCCEEEEEEECCCCCCHHHHHHCCCCCEEEEEECCCCEEEEECCCCEEEEEEEEEEECC
EIRGFHVSGIGPRDKKTLDALGGKFYFNMINQVDFPIGLPDDLGIKGSLFVDAATLFGLD
CCCEEEECCCCCCCCHHHHHHCCHHEEEHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHH
YINKEYYEDKSLRVSVGFGISWRSPFGPMRLDFGFPILKKDYDVTDMIRFSMQ
HHHHHHCCCCCEEEEEEECEECCCCCCCEEEECCCCCCCCCCCHHHHHHCCCC
>Mature Secondary Structure
MRYIIIILILFTSSLAHAEALNTKIKQVQINGNHRLDYKTIYFYSKINLQDNVTQETIDQ
CEEEEEEEEHHHCCHHHHHHHCCEEEEEEECCCEEEEEEEEEEEEEECCCCCCCHHHHHH
IIKNLHSTQLFSHIEVYVNQDNYLVINVTENPVINNIVFYGNKEFSKKDLVNDILKLKKL
HHHHHHHHHHEEEEEEEECCCCEEEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHHHHH
AVFTKSKLQQDISNLLSLYQSKGKLSAKVTYEVKELENNKIDIIIKINEGPTSRIKIIKF
HHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCEEEEEEECCCCCCEEEEEEE
TGNQFFSDAMLKKAIQSSEYYPYKIFSSNTKFASERLMLDQAGLYNFYTSKGFIDFKIKS
ECCHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECCCCEEEEEHHH
VVPEIREDHNINLIFAVEEGIRYKFGNSNIIIDKQVSNHQQLKEEIQNLILSKSGDTFNR
HHHHHHCCCCEEEEEEEECCCEEEECCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCCH
ESINNSIEKITQYLSNNGNFFSDIKHEYRVKDDVVDIDYIIYTGNKVYINNISITNNKTT
HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEEEEEEEEEECCEEEEEEEEEECCCHH
LDQVIRRKLTISEGDIYNASVINRSYKNILGLGFFESVNVENHKINDSLVDLNFQVKERG
HHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEEEEEECC
TGTFSVSAGFSSVTGLVGKINIQERNLFGTGKILSLQAEKSTSSLSSSIDFVVPNFSETD
CEEEEEECCCHHHCCCEEEEEEEECCEECCCCEEEEEECCCHHHHHCCCCEEECCCCCCC
SAVGFGLFYSHQNKPKGKDFPNLINPAAITGNTDAAFSSSNAGFMLHTSHDITDDLNLAL
CCEEEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEECCCCCCCHHHEE
HYAYKHVNIFNVKDTASELIKEQAGKNIDSSVGYSLQFRKFDNLSKIKDGYLVKLHQSFS
EEEEEEEEEEECHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHCCCCEEEEEECHHC
GLGGTLHYIKTEGSVNYSREILPKVSSDILLNIKTSMGYVFSYKSDEQVKINQRFIIGSN
CCCCEEEEEEECCCCCCHHHHHHCCCCCEEEEEECCCCEEEEECCCCEEEEEEEEEEECC
EIRGFHVSGIGPRDKKTLDALGGKFYFNMINQVDFPIGLPDDLGIKGSLFVDAATLFGLD
CCCEEEECCCCCCCCHHHHHHCCHHEEEHHHHCCCCCCCCCCCCCCCEEEEEHHHHHHHH
YINKEYYEDKSLRVSVGFGISWRSPFGPMRLDFGFPILKKDYDVTDMIRFSMQ
HHHHHHCCCCCEEEEEEECEECCCCCCCEEEECCCCCCCCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10710307 [H]