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The map label for this gene is rpmC

Identifier: 88658031

GI number: 88658031

Start: 402434

End: 402637

Strand: Direct

Name: rpmC

Synonym: ECH_0417

Alternate gene names: 88658031

Gene position: 402434-402637 (Clockwise)

Preceding gene: 88658013

Following gene: 88658519

Centisome position: 34.21

GC content: 28.43

Gene sequence:

>204_bases
ATGGATATTGTTGATATAAGGTCTAAGAGTAATGATGAGTTGCGCGAACTATTAGTAAATTTAGGGAAAGAATTAGTTAA
TGCTGTATTGAATAGGAAAGTTGATAAATCAACAAACCACTTTTATTGTAGAAATATAAAAAAAGATATAGCCAGAGTAT
TAACAGTATTAAATGAGAGAAGGAAAGAGGAAAAACATGTCTAA

Upstream 100 bases:

>100_bases
AGTGCCATTAAATTTAGCTAGGGAGGCATTGAATAAAGCTCAAGCTAAGCTTCCAATGAAGTGTAAATTTGTTAGTGATG
AATTGTAAAGGTATTGAGCT

Downstream 100 bases:

>100_bases
TAAGAAAGTTTTAACAGGGATTGTAGTTGATGCAAAATGTGATAAAACTATAAAGGTAATGGTTTCTCGTATGATAATGC
ATAAAACGTATAAGAAGATA

Product: 50S ribosomal protein L29

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 67

Protein sequence:

>67_residues
MDIVDIRSKSNDELRELLVNLGKELVNAVLNRKVDKSTNHFYCRNIKKDIARVLTVLNERRKEEKHV

Sequences:

>Translated_67_residues
MDIVDIRSKSNDELRELLVNLGKELVNAVLNRKVDKSTNHFYCRNIKKDIARVLTVLNERRKEEKHV
>Mature_67_residues
MDIVDIRSKSNDELRELLVNLGKELVNAVLNRKVDKSTNHFYCRNIKKDIARVLTVLNERRKEEKHV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L29P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL29_EHRCR (Q2GH48)

Other databases:

- EMBL:   CP000236
- RefSeq:   YP_507235.1
- ProteinModelPortal:   Q2GH48
- SMR:   Q2GH48
- STRING:   Q2GH48
- GeneID:   3927620
- GenomeReviews:   CP000236_GR
- KEGG:   ech:ECH_0417
- TIGR:   ECH_0417
- eggNOG:   NOG145715
- HOGENOM:   HBG730819
- OMA:   CNNISRF
- ProtClustDB:   PRK00306
- BioCyc:   ECHA205920:ECH_0417-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00374_B
- InterPro:   IPR001854
- Gene3D:   G3DSA:1.10.287.310
- TIGRFAMs:   TIGR00012

Pfam domain/function: PF00831 Ribosomal_L29; SSF46561 Ribosomal_L29

EC number: NA

Molecular weight: Translated: 7918; Mature: 7918

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: PS00579 RIBOSOMAL_L29

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIVDIRSKSNDELRELLVNLGKELVNAVLNRKVDKSTNHFYCRNIKKDIARVLTVLNER
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
RKEEKHV
HHHHCCC
>Mature Secondary Structure
MDIVDIRSKSNDELRELLVNLGKELVNAVLNRKVDKSTNHFYCRNIKKDIARVLTVLNER
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
RKEEKHV
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA