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The map label for this gene is p28 [H]

Identifier: 88657635

GI number: 88657635

Start: 1163968

End: 1164813

Strand: Direct

Name: p28 [H]

Synonym: ECH_1143

Alternate gene names: 88657635

Gene position: 1163968-1164813 (Clockwise)

Preceding gene: 88658131

Following gene: 88658501

Centisome position: 98.96

GC content: 36.41

Gene sequence:

>846_bases
ATGAATTACAAAAAAGTTTTCATAACAAGTGCATTGATATCATTAATATCTTCTCTACCTGGAGTATCATTTTCCGACCC
AGCAGGTAGTGGTATTAACGGTAATTTCTACATCAGTGGAAAATACATGCCAAGTGCTTCGCATTTTGGAGTATTCTCTG
CTAAGGAAGAAAGAAATACAACAGTTGGAGTGTTTGGACTGAAGCAAAATTGGGACGGAAGCGCAATATCCAACTCCTCC
CCAAACGATGTATTCACTGTCTCAAATTATTCATTTAAATATGAAAACAACCCGTTTTTAGGTTTTGCAGGAGCTATTGG
TTACTCAATGGATGGTCCAAGAATAGAGCTTGAAGTATCTTATGAAACATTTGATGTAAAAAATCAAGGTAACAATTATA
AGAATGAAGCACATAGATATTGTGCTCTATCCCATAACTCAGCAGCAGACATGAGTAGTGCAAGTAATAATTTTGTCTTT
CTAAAAAATGAAGGATTACTTGACATATCATTTATGCTGAACGCATGCTATGACGTAGTAGGCGAAGGCATACCTTTTTC
TCCTTATATATGCGCAGGTATCGGTACTGATTTAGTATCCATGTTTGAAGCTACAAATCCTAAAATTTCTTACCAAGGAA
AGTTAGGTTTAAGCTACTCTATAAGCCCAGAAGCTTCTGTGTTTATTGGTGGGCACTTTCATAAGGTAATAGGGAACGAA
TTTAGAGATATTCCTACTATAATACCTACTGGATCAACACTTGCAGGAAAAGGAAACTACCCTGCAATAGTAATACTGGA
TGTATGCCACTTTGGAATAGAACTTGGAGGAAGGTTTGCTTTCTAA

Upstream 100 bases:

>100_bases
TACAAAAGTTACCGATATTTTATACAAAAATTTATATTCTGACTTGCTTTTATATGACACTTCTACTATTGTTAATTTAT
TTGTCACTATTAGGTTATAT

Downstream 100 bases:

>100_bases
CCTGGCAGTGTGTAGTTTCTATTTTAGTGTGATTTCTACAATAAAAGGTAAGTTGAGTTCATTATAGGTAGCTAGTAATT
ATTTTTTTCATAAACCTAGT

Product: major outer membrane protein P28

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MNYKKVFITSALISLISSLPGVSFSDPAGSGINGNFYISGKYMPSASHFGVFSAKEERNTTVGVFGLKQNWDGSAISNSS
PNDVFTVSNYSFKYENNPFLGFAGAIGYSMDGPRIELEVSYETFDVKNQGNNYKNEAHRYCALSHNSAADMSSASNNFVF
LKNEGLLDISFMLNACYDVVGEGIPFSPYICAGIGTDLVSMFEATNPKISYQGKLGLSYSISPEASVFIGGHFHKVIGNE
FRDIPTIIPTGSTLAGKGNYPAIVILDVCHFGIELGGRFAF

Sequences:

>Translated_281_residues
MNYKKVFITSALISLISSLPGVSFSDPAGSGINGNFYISGKYMPSASHFGVFSAKEERNTTVGVFGLKQNWDGSAISNSS
PNDVFTVSNYSFKYENNPFLGFAGAIGYSMDGPRIELEVSYETFDVKNQGNNYKNEAHRYCALSHNSAADMSSASNNFVF
LKNEGLLDISFMLNACYDVVGEGIPFSPYICAGIGTDLVSMFEATNPKISYQGKLGLSYSISPEASVFIGGHFHKVIGNE
FRDIPTIIPTGSTLAGKGNYPAIVILDVCHFGIELGGRFAF
>Mature_281_residues
MNYKKVFITSALISLISSLPGVSFSDPAGSGINGNFYISGKYMPSASHFGVFSAKEERNTTVGVFGLKQNWDGSAISNSS
PNDVFTVSNYSFKYENNPFLGFAGAIGYSMDGPRIELEVSYETFDVKNQGNNYKNEAHRYCALSHNSAADMSSASNNFVF
LKNEGLLDISFMLNACYDVVGEGIPFSPYICAGIGTDLVSMFEATNPKISYQGKLGLSYSISPEASVFIGGHFHKVIGNE
FRDIPTIIPTGSTLAGKGNYPAIVILDVCHFGIELGGRFAF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen msp4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR002566 [H]

Pfam domain/function: PF01617 Surface_Ag_2 [H]

EC number: NA

Molecular weight: Translated: 30343; Mature: 30343

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYKKVFITSALISLISSLPGVSFSDPAGSGINGNFYISGKYMPSASHFGVFSAKEERNT
CCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEECCCCCCC
TVGVFGLKQNWDGSAISNSSPNDVFTVSNYSFKYENNPFLGFAGAIGYSMDGPRIELEVS
EEEEEEECCCCCCCCCCCCCCCCEEEECCEEEEECCCCEEEECCCCCCCCCCCEEEEEEE
YETFDVKNQGNNYKNEAHRYCALSHNSAADMSSASNNFVFLKNEGLLDISFMLNACYDVV
EEEEEECCCCCCCCCHHHEEEEECCCCCCCCCCCCCCEEEEECCCCEEHHHHHHHHHHHH
GEGIPFSPYICAGIGTDLVSMFEATNPKISYQGKLGLSYSISPEASVFIGGHFHKVIGNE
CCCCCCCCEEEEHHHHHHHHHHHCCCCCEEEEECCCEEEECCCCCEEEECCEEHHHHCCH
FRDIPTIIPTGSTLAGKGNYPAIVILDVCHFGIELGGRFAF
HHCCCEEEECCCEECCCCCCCEEEEEEEHHHHHHCCCEECC
>Mature Secondary Structure
MNYKKVFITSALISLISSLPGVSFSDPAGSGINGNFYISGKYMPSASHFGVFSAKEERNT
CCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCEEECCCCCCC
TVGVFGLKQNWDGSAISNSSPNDVFTVSNYSFKYENNPFLGFAGAIGYSMDGPRIELEVS
EEEEEEECCCCCCCCCCCCCCCCEEEECCEEEEECCCCEEEECCCCCCCCCCCEEEEEEE
YETFDVKNQGNNYKNEAHRYCALSHNSAADMSSASNNFVFLKNEGLLDISFMLNACYDVV
EEEEEECCCCCCCCCHHHEEEEECCCCCCCCCCCCCCEEEEECCCCEEHHHHHHHHHHHH
GEGIPFSPYICAGIGTDLVSMFEATNPKISYQGKLGLSYSISPEASVFIGGHFHKVIGNE
CCCCCCCCEEEEHHHHHHHHHHHCCCCCEEEEECCCEEEECCCCCEEEECCEEHHHHCCH
FRDIPTIIPTGSTLAGKGNYPAIVILDVCHFGIELGGRFAF
HHCCCEEEECCCEECCCCCCCEEEEEEEHHHHHHCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8294020 [H]