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The map label for this gene is yfjD [C]

Identifier: 88608860

GI number: 88608860

Start: 328184

End: 329476

Strand: Direct

Name: yfjD [C]

Synonym: NSE_0404

Alternate gene names: 88608860

Gene position: 328184-329476 (Clockwise)

Preceding gene: 88608584

Following gene: 88608114

Centisome position: 38.21

GC content: 39.6

Gene sequence:

>1293_bases
ATGTCTGGTTTATTACTTTCGTTGCTTGCTTTATTACTTTTCTTAGCTCTCCTTTTGTCCTGTGTGTTCTCAGGTGGTGA
GACTGCTATAACAGTTGTAAACCCAGCTAAATTGATTCAGCTTAAGGGTAAGAATGACAGAAGAGTTACGCTACTGCTCG
ATCTACATAACGACAAAGAACGTGTCATCAGTACGATATTGCTGTGTAACAATGTTGTAAACATATTAGCTTCTTCTATA
TCAGCTTTTTTTGTGGTCAACTTTTTTGGAAGCATTGGGATACTGGTTTCCACTTGTGTTATGAGCGTCATAATAGTGAT
TTTTGGTGAGATATTTCCAAAGACTTACGCAATTAACCACCCTGAAACGCTCGGCATGTATCTTGCACCGTTCATGGTCA
TTTTAGTTAGACTCTTTGGGTCGCTTGTTAAGTATGTGAACCTAGTGGTAGGTGTTTTAGTGAAGTGGTTTGCTCCGTCG
AGCGACTCAACTAAGGTTTTTTCACCGTATGATGCTATTCGAGGTCTGATAATGTTGCACAAAAAATCGTATGTGCAGCA
GAATACACAAAAGAACTTAGAGGTCATTAATAACATGCTGGATCTTACTGAACTGCATGTGGATAAAATTATGACGCACC
GTAAAGATGTCTACTCTTTAAACATAAACCTTCCAAAAGATGAGCTCATCCAGTTGGTGCTCGGAACAACATACAGGTGG
ATACCTTTGTGGGAGGAAAGGGATGACAATTTTGTTAAGGTTCTTAATGCCGTCCAACTCAGAATTGCTTGTGCAAATGA
TCAGGACATTAAGATGAAAGACTACCTGACTGAACCTTCCTTCATTCCGGAAACAACCCTTGTGAGCGTCCAATTGCACA
ATTTCAAGGTGAACAAGGCAGATTTCTCGATTGTCATTGATGAATATGGCAATGCAATAGGAATAGTGACCTTCTTTGAT
ATCATTGAGGAGATCATTGGCGAGGCAGTTTATACCCACAATTACAAAGATATAAAAGACAGTGGAGACAACGGATACAT
AATAAACGGAAGGATTCCAATAAGGGATCTTAACAAAAAGATGGGTTTCAATTTTCCAACAGACCACAATCGCACCTTTG
CTGGCATGATAATTGATGAAATAGAACGCATTCCAAATGAGGGTGAGGTGTTTGAAATGTTTGGTTGCACGCTTGAAATT
CTCAAAATGAGGAATAATAAGCTCGTCTCCGTAAAAGTTAAGAGGATAAAAGAGGGTACAGGTGATGAAGGTTTGCACAC
AAGTGCGGGGTGA

Upstream 100 bases:

>100_bases
GTCGTGTTCGCATTGAGAATTTCTATTTGTGTAGATATATCGATGATTTCCTTCTTTTCTCTTGCTCTTTGAACTGTTCT
GTGCTCGGTGTTAGTCCCTA

Downstream 100 bases:

>100_bases
AAGGTTTGTGGTGCTGATGTATTCATCCCGTTAGCTTAGTTGTGTGTGAAAATAAGTTTTGTGCGTGCTATAACTTTAGC
ACTGCCAGTAAAGGGGTCTA

Product: CBS domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 429

Protein sequence:

>430_residues
MSGLLLSLLALLLFLALLLSCVFSGGETAITVVNPAKLIQLKGKNDRRVTLLLDLHNDKERVISTILLCNNVVNILASSI
SAFFVVNFFGSIGILVSTCVMSVIIVIFGEIFPKTYAINHPETLGMYLAPFMVILVRLFGSLVKYVNLVVGVLVKWFAPS
SDSTKVFSPYDAIRGLIMLHKKSYVQQNTQKNLEVINNMLDLTELHVDKIMTHRKDVYSLNINLPKDELIQLVLGTTYRW
IPLWEERDDNFVKVLNAVQLRIACANDQDIKMKDYLTEPSFIPETTLVSVQLHNFKVNKADFSIVIDEYGNAIGIVTFFD
IIEEIIGEAVYTHNYKDIKDSGDNGYIINGRIPIRDLNKKMGFNFPTDHNRTFAGMIIDEIERIPNEGEVFEMFGCTLEI
LKMRNNKLVSVKVKRIKEGTGDEGLHTSAG

Sequences:

>Translated_430_residues
MSGLLLSLLALLLFLALLLSCVFSGGETAITVVNPAKLIQLKGKNDRRVTLLLDLHNDKERVISTILLCNNVVNILASSI
SAFFVVNFFGSIGILVSTCVMSVIIVIFGEIFPKTYAINHPETLGMYLAPFMVILVRLFGSLVKYVNLVVGVLVKWFAPS
SDSTKVFSPYDAIRGLIMLHKKSYVQQNTQKNLEVINNMLDLTELHVDKIMTHRKDVYSLNINLPKDELIQLVLGTTYRW
IPLWEERDDNFVKVLNAVQLRIACANDQDIKMKDYLTEPSFIPETTLVSVQLHNFKVNKADFSIVIDEYGNAIGIVTFFD
IIEEIIGEAVYTHNYKDIKDSGDNGYIINGRIPIRDLNKKMGFNFPTDHNRTFAGMIIDEIERIPNEGEVFEMFGCTLEI
LKMRNNKLVSVKVKRIKEGTGDEGLHTSAG
>Mature_429_residues
SGLLLSLLALLLFLALLLSCVFSGGETAITVVNPAKLIQLKGKNDRRVTLLLDLHNDKERVISTILLCNNVVNILASSIS
AFFVVNFFGSIGILVSTCVMSVIIVIFGEIFPKTYAINHPETLGMYLAPFMVILVRLFGSLVKYVNLVVGVLVKWFAPSS
DSTKVFSPYDAIRGLIMLHKKSYVQQNTQKNLEVINNMLDLTELHVDKIMTHRKDVYSLNINLPKDELIQLVLGTTYRWI
PLWEERDDNFVKVLNAVQLRIACANDQDIKMKDYLTEPSFIPETTLVSVQLHNFKVNKADFSIVIDEYGNAIGIVTFFDI
IEEIIGEAVYTHNYKDIKDSGDNGYIINGRIPIRDLNKKMGFNFPTDHNRTFAGMIIDEIERIPNEGEVFEMFGCTLEIL
KMRNNKLVSVKVKRIKEGTGDEGLHTSAG

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=366, Percent_Identity=25.4098360655738, Blast_Score=109, Evalue=4e-24,
Organism=Escherichia coli, GI145693175, Length=408, Percent_Identity=26.7156862745098, Blast_Score=165, Evalue=5e-42,
Organism=Escherichia coli, GI87082033, Length=234, Percent_Identity=26.0683760683761, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1790664, Length=442, Percent_Identity=20.5882352941176, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1786879, Length=234, Percent_Identity=23.5042735042735, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1788119, Length=223, Percent_Identity=23.7668161434978, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6324512, Length=330, Percent_Identity=24.8484848484848, Blast_Score=82, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 48399; Mature: 48268

Theoretical pI: Translated: 6.60; Mature: 6.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGLLLSLLALLLFLALLLSCVFSGGETAITVVNPAKLIQLKGKNDRRVTLLLDLHNDKE
CCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEECCCCCEEEEEEEECCCHH
RVISTILLCNNVVNILASSISAFFVVNFFGSIGILVSTCVMSVIIVIFGEIFPKTYAINH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC
PETLGMYLAPFMVILVRLFGSLVKYVNLVVGVLVKWFAPSSDSTKVFSPYDAIRGLIMLH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHHH
KKSYVQQNTQKNLEVINNMLDLTELHVDKIMTHRKDVYSLNINLPKDELIQLVLGTTYRW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCEEE
IPLWEERDDNFVKVLNAVQLRIACANDQDIKMKDYLTEPSFIPETTLVSVQLHNFKVNKA
EECCCCCCCHHHHHHHHHEEEEEECCCCCCCHHHHCCCCCCCCCCEEEEEEEEEEEECCC
DFSIVIDEYGNAIGIVTFFDIIEEIIGEAVYTHNYKDIKDSGDNGYIINGRIPIRDLNKK
CEEEEEECCCCEEHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCEEEECCCCHHHHHHH
MGFNFPTDHNRTFAGMIIDEIERIPNEGEVFEMFGCTLEILKMRNNKLVSVKVKRIKEGT
CCCCCCCCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHHCCC
GDEGLHTSAG
CCCCCCCCCC
>Mature Secondary Structure 
SGLLLSLLALLLFLALLLSCVFSGGETAITVVNPAKLIQLKGKNDRRVTLLLDLHNDKE
CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCEEEEEEECCCCCEEEEEEEECCCHH
RVISTILLCNNVVNILASSISAFFVVNFFGSIGILVSTCVMSVIIVIFGEIFPKTYAINH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCC
PETLGMYLAPFMVILVRLFGSLVKYVNLVVGVLVKWFAPSSDSTKVFSPYDAIRGLIMLH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHHH
KKSYVQQNTQKNLEVINNMLDLTELHVDKIMTHRKDVYSLNINLPKDELIQLVLGTTYRW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCEEE
IPLWEERDDNFVKVLNAVQLRIACANDQDIKMKDYLTEPSFIPETTLVSVQLHNFKVNKA
EECCCCCCCHHHHHHHHHEEEEEECCCCCCCHHHHCCCCCCCCCCEEEEEEEEEEEECCC
DFSIVIDEYGNAIGIVTFFDIIEEIIGEAVYTHNYKDIKDSGDNGYIINGRIPIRDLNKK
CEEEEEECCCCEEHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCEEEECCCCHHHHHHH
MGFNFPTDHNRTFAGMIIDEIERIPNEGEVFEMFGCTLEILKMRNNKLVSVKVKRIKEGT
CCCCCCCCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEHHHCCC
GDEGLHTSAG
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]