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The map label for this gene is yrbE [C]

Identifier: 88608548

GI number: 88608548

Start: 617994

End: 618746

Strand: Direct

Name: yrbE [C]

Synonym: NSE_0697

Alternate gene names: 88608548

Gene position: 617994-618746 (Clockwise)

Preceding gene: 88607980

Following gene: 88608687

Centisome position: 71.94

GC content: 39.71

Gene sequence:

>753_bases
ATGTATAATCATATTAAAAATACAATTAAGATCTTCGGCGATTTTACGCTCTTCAGCCTAAGCACGTTCCTGAGCGGTAG
GAAGATATATTTTTCGGAAATAATAAAACAGCTATTCTTGATAGGATATTACTCGATGCCAATCGTTGCATTTTCTGCTG
TGTTCATAGGAGCAATGTTGGCGTTCCATACCTATACTGGCCTTGATCTTTTTCAATCACAAACGATGGTTGCGCAAATC
TTAGCAAAATCGATCACTCGGGAAATAGGACCCGTTGTTGTTGGTATAGTAGTTGCAGGACGAGTTGCTTCAACAATAGC
AGCAGAGATAGGAACAATGCGAGTGACAGAACAAGTGGACTTATTGAGGTCACTCTCGATCAATGTGCATGCGTACCTTG
TACTTCCCAAGATCATCGCAGCGCTGATTTCTTTTCCTGTGTTAGAGATAGTCTCTACACTCTTTGGAATGCTGGGCGGT
TACCTTATAGGAACATACAAATTTGCCTTTAGCAAAATGCTTTATGTATCAGATACACTTACCTTTCTTACATCCAAGGA
TCTTATTGCTGGAATGACAAAATCGTTCTTTTTTGGCTTTATTACAGCAAGTGTAAGCTGCTTTAATGCTTTGAGAGCCA
CACATGGCGCAAAAGGGGTTGGAATTGCCGTAACAAATTCGGTGGTGGCATCCTTTGTCTTAATACTGTTGTCAAACTAT
CTGATCACATTAGCGATATTCCATGAAAAATAA

Upstream 100 bases:

>100_bases
TGAACTTGATTACCTTATCTTCAATTGATATAAGAGCAGGACGATTCTTTCTACTTTTCTAAATAGAAAAGAACATTCGC
GTTCATATGGACATTGCACA

Downstream 100 bases:

>100_bases
GATCAGTGTTCGTGACCTTTCAGTATCTCTTTGCGGCAGAAGTGTCTTGAATGACGTAAACCTCGATCTCTCTTTTGGTG
AAACTTTATCCGTAATTGGT

Product: putative ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MYNHIKNTIKIFGDFTLFSLSTFLSGRKIYFSEIIKQLFLIGYYSMPIVAFSAVFIGAMLAFHTYTGLDLFQSQTMVAQI
LAKSITREIGPVVVGIVVAGRVASTIAAEIGTMRVTEQVDLLRSLSINVHAYLVLPKIIAALISFPVLEIVSTLFGMLGG
YLIGTYKFAFSKMLYVSDTLTFLTSKDLIAGMTKSFFFGFITASVSCFNALRATHGAKGVGIAVTNSVVASFVLILLSNY
LITLAIFHEK

Sequences:

>Translated_250_residues
MYNHIKNTIKIFGDFTLFSLSTFLSGRKIYFSEIIKQLFLIGYYSMPIVAFSAVFIGAMLAFHTYTGLDLFQSQTMVAQI
LAKSITREIGPVVVGIVVAGRVASTIAAEIGTMRVTEQVDLLRSLSINVHAYLVLPKIIAALISFPVLEIVSTLFGMLGG
YLIGTYKFAFSKMLYVSDTLTFLTSKDLIAGMTKSFFFGFITASVSCFNALRATHGAKGVGIAVTNSVVASFVLILLSNY
LITLAIFHEK
>Mature_250_residues
MYNHIKNTIKIFGDFTLFSLSTFLSGRKIYFSEIIKQLFLIGYYSMPIVAFSAVFIGAMLAFHTYTGLDLFQSQTMVAQI
LAKSITREIGPVVVGIVVAGRVASTIAAEIGTMRVTEQVDLLRSLSINVHAYLVLPKIIAALISFPVLEIVSTLFGMLGG
YLIGTYKFAFSKMLYVSDTLTFLTSKDLIAGMTKSFFFGFITASVSCFNALRATHGAKGVGIAVTNSVVASFVLILLSNY
LITLAIFHEK

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG0767

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaE permease family [H]

Homologues:

Organism=Escherichia coli, GI1789585, Length=220, Percent_Identity=31.8181818181818, Blast_Score=111, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003453 [H]

Pfam domain/function: PF02405 DUF140 [H]

EC number: NA

Molecular weight: Translated: 27312; Mature: 27312

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNHIKNTIKIFGDFTLFSLSTFLSGRKIYFSEIIKQLFLIGYYSMPIVAFSAVFIGAML
CCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFHTYTGLDLFQSQTMVAQILAKSITREIGPVVVGIVVAGRVASTIAAEIGTMRVTEQVD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLRSLSINVHAYLVLPKIIAALISFPVLEIVSTLFGMLGGYLIGTYKFAFSKMLYVSDTL
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TFLTSKDLIAGMTKSFFFGFITASVSCFNALRATHGAKGVGIAVTNSVVASFVLILLSNY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
LITLAIFHEK
HHHHHEEECC
>Mature Secondary Structure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HHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA