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The map label for this gene is rplY

Identifier: 88608536

GI number: 88608536

Start: 249797

End: 250381

Strand: Direct

Name: rplY

Synonym: NSE_0306

Alternate gene names: 88608536

Gene position: 249797-250381 (Clockwise)

Preceding gene: 88608167

Following gene: 88608638

Centisome position: 29.08

GC content: 43.76

Gene sequence:

>585_bases
ATGGTTGTTTCGATTGAGTGTATTCCTAGAACTAGTTTCGGGAGAAATAGCGCGAATGTTTTGCGCAGGTCTGGGTTTGT
GCCGGCTGTTATCTATGGTAAAGAGCGAGAAAATATAAACGTTGCCATTTCCGTTAGAGATGTAAGTAAGCATTTTGCAG
TCTTATCGGGTAGTGGAGTTGTTGAGTTATCTTGCGAGGGAAAGGTATATAAGGTAGTCCCTAAAGCATATGAGCTCCAC
CCAGTTTCTTCTGTTGTGCTGCACTTGGATTTTGTTTTCGCTGGTGAACATGCTTCGAAGTTTCAAGTTCCGCTCAATTT
TGTAAACTCTGGAAAGTCCGAGGCAATAAGGCTTGGTGCAATGCTCAATATAGTCAAGCGGACAGTTCTTGTCAGGTGTA
CGGCAGCGAATCTTCCTAAGAGTATTCCTGTAGATATAGAAAACGCTAAGGTAGGTGACTCAATCAAGTTCTCTGATCTA
GTTTTTCCTGATGGAGTTGTGCCACTTGCGAGAGATGCAAATTCGGTTGTTGCGACGGTTGTAGGTAAGAAAGTTAAGGC
TGGTACTGTGGCTGCTACCGCGTAA

Upstream 100 bases:

>100_bases
ATAACGTGGCTTCTTACGCGCGGTACGTACGCTGGAGATTTGCATAATCTTAAAAAACGATCTAGAATCGGGTGTTTCTG
CGATGTTTGCTTAGGTAAGA

Downstream 100 bases:

>100_bases
TGTCCGAGTTTCGCACGTTTGTTCTGTGTGGCTTGGGTAACCCGGGACTGCGGTATGCGCAGACGCGGCATAACCTTGGG
TTCATGCTTATTGATTACGT

Product: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5

Products: NA

Alternate protein names: General stress protein CTC

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MVVSIECIPRTSFGRNSANVLRRSGFVPAVIYGKERENINVAISVRDVSKHFAVLSGSGVVELSCEGKVYKVVPKAYELH
PVSSVVLHLDFVFAGEHASKFQVPLNFVNSGKSEAIRLGAMLNIVKRTVLVRCTAANLPKSIPVDIENAKVGDSIKFSDL
VFPDGVVPLARDANSVVATVVGKKVKAGTVAATA

Sequences:

>Translated_194_residues
MVVSIECIPRTSFGRNSANVLRRSGFVPAVIYGKERENINVAISVRDVSKHFAVLSGSGVVELSCEGKVYKVVPKAYELH
PVSSVVLHLDFVFAGEHASKFQVPLNFVNSGKSEAIRLGAMLNIVKRTVLVRCTAANLPKSIPVDIENAKVGDSIKFSDL
VFPDGVVPLARDANSVVATVVGKKVKAGTVAATA
>Mature_194_residues
MVVSIECIPRTSFGRNSANVLRRSGFVPAVIYGKERENINVAISVRDVSKHFAVLSGSGVVELSCEGKVYKVVPKAYELH
PVSSVVLHLDFVFAGEHASKFQVPLNFVNSGKSEAIRLGAMLNIVKRTVLVRCTAANLPKSIPVDIENAKVGDSIKFSDL
VFPDGVVPLARDANSVVATVVGKKVKAGTVAATA

Specific function: This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance

COG id: COG1825

COG function: function code J; Ribosomal protein L25 (general stress protein Ctc)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L25P family. Ctc subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL25_NEOSM (Q2GEA0)

Other databases:

- EMBL:   CP000237
- RefSeq:   YP_506196.1
- ProteinModelPortal:   Q2GEA0
- SMR:   Q2GEA0
- STRING:   Q2GEA0
- GeneID:   3932101
- GenomeReviews:   CP000237_GR
- KEGG:   nse:NSE_0306
- TIGR:   NSE_0306
- eggNOG:   COG1825
- HOGENOM:   HBG731986
- OMA:   ELIMKKG
- ProtClustDB:   CLSK2527976
- BioCyc:   NSEN222891:NSE_0306-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_01334
- InterPro:   IPR020056
- InterPro:   IPR011035
- InterPro:   IPR020057
- InterPro:   IPR001021
- InterPro:   IPR020055
- Gene3D:   G3DSA:2.40.240.10
- Gene3D:   G3DSA:2.170.120.20
- ProDom:   PD012503
- TIGRFAMs:   TIGR00731

Pfam domain/function: PF01386 Ribosomal_L25p; SSF50715 Ribosomal_L25rel

EC number: NA

Molecular weight: Translated: 20659; Mature: 20659

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVSIECIPRTSFGRNSANVLRRSGFVPAVIYGKERENINVAISVRDVSKHFAVLSGSGV
CEEEEEECCCCCCCCCHHHHHHHCCCCEEEEECCCCCCEEEEEEEEECCCEEEEEECCCE
VELSCEGKVYKVVPKAYELHPVSSVVLHLDFVFAGEHASKFQVPLNFVNSGKSEAIRLGA
EEEEECCEEEEECCCCEEECCHHEEEEEEEEEEECCCCCEEEEEEEEECCCCCCEEHHHH
MLNIVKRTVLVRCTAANLPKSIPVDIENAKVGDSIKFSDLVFPDGVVPLARDANSVVATV
HHHHHHHEEEEEEECCCCCCCCCEEECCCCCCCCEEECEEECCCCCCEECCCCCCEEEEE
VGKKVKAGTVAATA
CCCCCCCCEEEECC
>Mature Secondary Structure
MVVSIECIPRTSFGRNSANVLRRSGFVPAVIYGKERENINVAISVRDVSKHFAVLSGSGV
CEEEEEECCCCCCCCCHHHHHHHCCCCEEEEECCCCCCEEEEEEEEECCCEEEEEECCCE
VELSCEGKVYKVVPKAYELHPVSSVVLHLDFVFAGEHASKFQVPLNFVNSGKSEAIRLGA
EEEEECCEEEEECCCCEEECCHHEEEEEEEEEEECCCCCEEEEEEEEECCCCCCEEHHHH
MLNIVKRTVLVRCTAANLPKSIPVDIENAKVGDSIKFSDLVFPDGVVPLARDANSVVATV
HHHHHHHEEEEEEECCCCCCCCCEEECCCCCCCCEEECEEECCCCCCEECCCCCCEEEEE
VGKKVKAGTVAATA
CCCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA