Click here to switch to the map view.

The map label for this gene is 88608530

Identifier: 88608530

GI number: 88608530

Start: 316415

End: 317437

Strand: Reverse

Name: 88608530

Synonym: NSE_0386

Alternate gene names: NA

Gene position: 317437-316415 (Counterclockwise)

Preceding gene: 88608784

Following gene: 88608503

Centisome position: 36.95

GC content: 43.01

Gene sequence:

>1023_bases
TTGGCTGAATGCCGCCTCCACCTGTACAAACGGGTCTCAAGTTTCGAGATATCAAAAACGGTGGTTTGGGTCTTAGTTAG
TTTGGTTATGAAAAAGGTCACTGTTTTTGGCGGCAGTGGGTTTATCGGTTCTTATGTAGTGAGGGAATTGGTAAAGTCCG
GCTACCGGGTTACCGTAGTTGCCAATTCGCTTTCGTGCGCAAAAAAGCTTAAGCTTTCCGGAAATCTAGGCCAGATCTCG
GTGGTACACGGTGACATAAGGTACCCCGATGATATCGTGAAAGGCATCGGAAACTCTGAGATTGTCATAAACATGGTTGG
TGTTCTGAGAGAAACTTCCAGCGCTTCTTTTGGTGCAATTAATCATTTGGCATGCGCGCAGGTTGCACAAATAGCTGCAG
AGAACGGTGTGCGACGTTTCATTCATTTTTCCGCACTACTAGGTTGTAATGGTGCAACCAAGTACGGTAAAAGTAAGCTC
AATGGAGAAGAAGCAGTAAGATCAGCTTTCCCGGAAAGCATAATAATCAGACCAGGAGTCGTTTTTGGAGAGGAGGACAA
CTTTATAAATCTCTTCGTTAAACTAGGCAGGAAATTACGTATTTTACTTCTACCTGCATGCAAAACTGCATCAATACAAC
CAGTTTATGTTGGCGACCTAGCTTTGCTAGTCGCTAAAATTTTGCAGAACGAAACATTGAAAGGTGAGATCTATCCAGTA
GTTGGATCAAAAAGATATACACTGAATGAAATTTGTTCGCTCATCAGCAGGCTTCTTGGCATAACTGTGATATGCCTACC
GATTCCCTATTGGATAGCACTTTGTGAAGCTGCACTCCTTGAATGCTTTTTGCTGAAACCTGTGAATAAGTTTCTCTCAG
GTAAAACTGCACCGGTTATAACACGCGGGCAAGTTAAAATGCTGAAGTACGGCAGTATCTCAGATGAAAACGCTTTGCAG
GCATTTGATATTCCCAGCACTGCTCTTGAAGAGAAACTTCGGTCCTACATAAGAACAATTTAA

Upstream 100 bases:

>100_bases
GTGAAAGACTAGCGTTGGCCTGGACCATGCGTAGAGGATATCAAAACTTTGAGCTACAGAAGAACTTGAAGGAGGCTAAA
ACGTCCATGCTCGGCGTAGC

Downstream 100 bases:

>100_bases
GTACTTCTCTTTTTGGAGTTACACTTGTGGCCCGCTCATTCTGAAATGCATATAGCTTGTTCAATCAGCACCCATTCAAT
TTACAATCTAAAGTATATAA

Product: NADH-ubiquinone oxidoreductase family protein

Products: NA

Alternate protein names: NADH Dehydrogenase; NADH-Ubiquinone Oxidoreductase; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase; Nucleoside-Diphosphate-Sugar Epimerase; Oxidoreductase; NAD Dependent Epimerase/Dehydratase Family Protein; NADH-Ubiquinone Oxidoreductase Subunit; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase Family; NADH-Ubiquinone Oxireductase; NADH Dehydrogenase/Oxidoreductase-Like Protein; NADH-Ubiquinone Oxidoreductase Family Protein; NAD-Dependent Epimerase/Dehydratase Family Protein; 3-Beta-Hydroxy-Delta(5)-Steroid Dehydrogenase; NADH Ubiquinone Oxidoreductase; Male Sterility-Like Protein; Nucleoside-Diphosphate-Sugar Epimerases; NADH Dehydrogenase 1 Alpha Subcomplex; Dehydrogenase; NADH-Dependent Oxidoreductase; NADH Dehydrogenase/NADH Dehydrogenase Protein; Ubiquinone Dependent NADH Dehydrogenase; DTDP-4-Dehydrorhamnose Reductase; NADH Dehydrogenase Subunit; Homolog NADH Dehydrogenase; NADH Dehydrogenase-Like Protein; NAD Dependent Epimerase; Nucleoside-Diphosphate Sugar Epimerase; NAD Dependent Epimerase/Dehydratase Family; NADH-Ubiquinone Oxidoreductase -Like Protein; NADH-Ubiquinone Oxidoreductase Putativ; NADH-Quinone Oxidoreductase

Number of amino acids: Translated: 340; Mature: 339

Protein sequence:

>340_residues
MAECRLHLYKRVSSFEISKTVVWVLVSLVMKKVTVFGGSGFIGSYVVRELVKSGYRVTVVANSLSCAKKLKLSGNLGQIS
VVHGDIRYPDDIVKGIGNSEIVINMVGVLRETSSASFGAINHLACAQVAQIAAENGVRRFIHFSALLGCNGATKYGKSKL
NGEEAVRSAFPESIIIRPGVVFGEEDNFINLFVKLGRKLRILLLPACKTASIQPVYVGDLALLVAKILQNETLKGEIYPV
VGSKRYTLNEICSLISRLLGITVICLPIPYWIALCEAALLECFLLKPVNKFLSGKTAPVITRGQVKMLKYGSISDENALQ
AFDIPSTALEEKLRSYIRTI

Sequences:

>Translated_340_residues
MAECRLHLYKRVSSFEISKTVVWVLVSLVMKKVTVFGGSGFIGSYVVRELVKSGYRVTVVANSLSCAKKLKLSGNLGQIS
VVHGDIRYPDDIVKGIGNSEIVINMVGVLRETSSASFGAINHLACAQVAQIAAENGVRRFIHFSALLGCNGATKYGKSKL
NGEEAVRSAFPESIIIRPGVVFGEEDNFINLFVKLGRKLRILLLPACKTASIQPVYVGDLALLVAKILQNETLKGEIYPV
VGSKRYTLNEICSLISRLLGITVICLPIPYWIALCEAALLECFLLKPVNKFLSGKTAPVITRGQVKMLKYGSISDENALQ
AFDIPSTALEEKLRSYIRTI
>Mature_339_residues
AECRLHLYKRVSSFEISKTVVWVLVSLVMKKVTVFGGSGFIGSYVVRELVKSGYRVTVVANSLSCAKKLKLSGNLGQISV
VHGDIRYPDDIVKGIGNSEIVINMVGVLRETSSASFGAINHLACAQVAQIAAENGVRRFIHFSALLGCNGATKYGKSKLN
GEEAVRSAFPESIIIRPGVVFGEEDNFINLFVKLGRKLRILLLPACKTASIQPVYVGDLALLVAKILQNETLKGEIYPVV
GSKRYTLNEICSLISRLLGITVICLPIPYWIALCEAALLECFLLKPVNKFLSGKTAPVITRGQVKMLKYGSISDENALQA
FDIPSTALEEKLRSYIRTI

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI6681764, Length=227, Percent_Identity=34.3612334801762, Blast_Score=127, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI17556106, Length=285, Percent_Identity=30.8771929824561, Blast_Score=122, Evalue=2e-28,
Organism=Drosophila melanogaster, GI24667554, Length=238, Percent_Identity=35.2941176470588, Blast_Score=139, Evalue=3e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37114; Mature: 36983

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAECRLHLYKRVSSFEISKTVVWVLVSLVMKKVTVFGGSGFIGSYVVRELVKSGYRVTVV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEE
ANSLSCAKKLKLSGNLGQISVVHGDIRYPDDIVKGIGNSEIVINMVGVLRETSSASFGAI
ECCHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHCCCCCCEEEHHHHHHHHCCCCCCCHH
NHLACAQVAQIAAENGVRRFIHFSALLGCNGATKYGKSKLNGEEAVRSAFPESIIIRPGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCE
VFGEEDNFINLFVKLGRKLRILLLPACKTASIQPVYVGDLALLVAKILQNETLKGEIYPV
EECCCCCHHHHHHHHCCCEEEEEEECCCCCCCCEEEHHHHHHHHHHHHCCCCCCCEEEEE
VGSKRYTLNEICSLISRLLGITVICLPIPYWIALCEAALLECFLLKPVNKFLSGKTAPVI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
TRGQVKMLKYGSISDENALQAFDIPSTALEEKLRSYIRTI
ECCCEEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
AECRLHLYKRVSSFEISKTVVWVLVSLVMKKVTVFGGSGFIGSYVVRELVKSGYRVTVV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEEEEE
ANSLSCAKKLKLSGNLGQISVVHGDIRYPDDIVKGIGNSEIVINMVGVLRETSSASFGAI
ECCHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHCCCCCCEEEHHHHHHHHCCCCCCCHH
NHLACAQVAQIAAENGVRRFIHFSALLGCNGATKYGKSKLNGEEAVRSAFPESIIIRPGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCEEECCCE
VFGEEDNFINLFVKLGRKLRILLLPACKTASIQPVYVGDLALLVAKILQNETLKGEIYPV
EECCCCCHHHHHHHHCCCEEEEEEECCCCCCCCEEEHHHHHHHHHHHHCCCCCCCEEEEE
VGSKRYTLNEICSLISRLLGITVICLPIPYWIALCEAALLECFLLKPVNKFLSGKTAPVI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE
TRGQVKMLKYGSISDENALQAFDIPSTALEEKLRSYIRTI
ECCCEEEEEECCCCCCCCEEEECCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA