| Definition | Neorickettsia sennetsu str. Miyayama chromosome, complete genome. |
|---|---|
| Accession | NC_007798 |
| Length | 859,006 |
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The map label for this gene is ppdK
Identifier: 88608476
GI number: 88608476
Start: 302295
End: 304898
Strand: Direct
Name: ppdK
Synonym: NSE_0369
Alternate gene names: 88608476
Gene position: 302295-304898 (Clockwise)
Preceding gene: 88608547
Following gene: 88608579
Centisome position: 35.19
GC content: 42.7
Gene sequence:
>2604_bases ATGTCAGAGAAGCTTGTATATCATTTTTCCCCTTCTAATGCGGATGGGGATGCCTTGATGTTGGATGTGCTCGGTGGCAA GGGTGCGAATCTTGCGCAGATGTGCAACATGGGGTTACCAGTGCCGCCAGGATTTACAATTTCCTCGAGTGCTTGTGAGC TTTATCATCGTGATAAAGATCTTTTCCGCAAGATTTTAGAAAAGGAAATACAAAAATCCTTGCAAGTGCTTGAGGCTGTC ACCGGTAAGGTATTTGGATCAAAAGTGAGACCACTATTGGTTTCGGTGCGTTCAGGTAGCAAGTTTTCTATGCCGGGGAT GCTTGATACCATTCTTAATGTAGGGCTAAACGATGAGATCATCGCTTCTTGTAGTAGCAGGTTTATTCTTGACAGCTATA GAAGACTCATTCAGATGTATGGGGATGTGGTTCTAAAAGTAGAATCCTACCATTTTGAAGAGGTGCTGTACAATTACAAG AACTCCAAGGGTATCCTGCGTGATCATGATCTCAGCATTAGCGACTTGCATGAGCTAATCGAGGCTTTTCGCGAAGTTGT CAAGCGGAATTCTCACGCTTCTTTACCAGAGGATGTTTATGTACAGGTCATGGCTTGCATAGAGGCTGTTTTTCAGTCCT GGGGAAACGAGCGTGCAAAAACGTACAGAAAAATTCATGATATTCCAGAGAGTGTAGGTACTGCAGTTAATATACAGAGT ATGGTCTTTGGGAATTTCAATGAGCGTTCTGGTTCTGGTGTTTTATTCACAAGGAATCCTTCCAATGGCCACAAAACGAT GTTCGGTGAGTACATGAAATGTGTGCAAGGAGAAGATATTGTTTCTGGTGTGAGAACGCCTCAACCTATTGGCGAACTGA AGTCTGAGAATCCAAGATTGTATGAACAGATTGAATCGGTTTGTCAAAGTTTGGAAAAGCACTATAGGGACGTGCAAGAT ATTGAATTTACTATCGAGGATGACGCGTTGTATATACTCCAGACGAGGAGTGCAAAGCGTTCAGTAGAAGCGGCGATAAG GGTTGCTGTCGATATGGTAAAGGAGGGATTGATAACAAAAGAAGAAGCTGTTCTCAGAATCAGACCAAAGTCGCTGGAAA GCTTGCTTCATCCTAGAATTGACGATGAAGCAAACCATCAAATAATAGGTAGTGGTTTGCCCGCATCACCAGGCGCTGCT TCTGGAAAAATAATTTTCTCCACTGAGGAGGCAGTAAAGCGAGCTCAAGGTGGTGAGAAGGTGATTCTTGTCAAAAGCGA GACTAGTCCAGAGGATATAGCGGGTATGCATGCTGCAGTTGCAATTCTTACGACGAGAGGTGGTATGACTTCGCATGCAG CTGTTGTGGCAAGAGGTATGGGCAAACCTTGTGTTTGCGCTCTTTCTGGTGGAAGCATTGACCAATATTCTCAGGTCCTG CGTATTACACCTGATGTCACTTTGAACAAAGGAGATGAAATTACAATTGATGGGACGAGTGGTAATGTCATTTTAGGAAA CGCAAGTACTTCTGAGTTCAGTTTTTCCGATGAATTTAGCACTTTCATGACTTGGGTCGATGAATTTAGGCAAATATCTG TGAGGGCAAATGCTGAAACGAAAGAAGATGTAGAAGTGGCGTTAAGATTTGGGGCGGATGGAATAGGTCTCTGCAGAACT GAACATATGTTTTTCTCAGAAGATAGAATTCATATAGTCCGGGATATGATAGTTGCAGAAGATCTACGGCAGAGAAGTAT AGCCCTAAAAAAGTTGCTTCCTATCCAGCAAGGCTGTTTTGCAGCGATCTTTCGTGAAATGCAGGGTAGGTGTGTCACAG TGAGATTACTTGATCCACCATTACATGAATTTTTACCAGCTGATGAGGCAAGCTTAGAGAGTTTTAGGAAGCATTCTGCA CTTGAAGACTCTTTCATACAAAGGAGGATAAAGGTGCTTAAAGAAGAGAATCCGATGCTGGGGCATCGTGGTTGTAGAAT AGCGATATCGCATCCTGAAATATATGAGATGCAGCTTCATGCGATTTTTGGAGCGGCACAAGAAGTGGGTGACGTAAAAC TAGAGGTTATGATTCCGTTTATCATGAACGCAGATGAGCTGTGTGCAATAAAACAGCTTGTCACATCGGTTGCGCAAGGG TACTCGGTTGATTATTTATTAGGTAACATGATCGAATTACCTTCTGCTGCAATTCTTGCTGACAGAATAGCTGAAAGTTC AGACTTTTTTAGTTTTGGGACTAATGATCTCACCCAAACGACTCTGGGTATTTCAAGAGATGATTGTGGAATGTTCATGA ATATTTATAAGGAGAAGGGTTTGTTCAGGGAGGATCCATTTATCTCTATTCAAGTTGAAAGTGTTGGTTTTTTGATCAAG GAAGCTATCAAAAAAGGTAGAAGTGCAAACAAAGCACTGAAAATAGGTATCTGTGGTGAACATGGTGGTGACCCATACTC TGTAGAGTTTTTTGCATCTTCGGGTGTGGACTATGTTTCTTGTTCGCCGTACAGGGTGCCGATTGCGAAAGTCGCAGCTG CACAGCATTCCATTAAGATGAAGCAAAACAACGAGACTCTTTAG
Upstream 100 bases:
>100_bases TGGTCTGACTCTCTCCAGATGTTGCATATGTTGTCCCTTGTTTTTAATATATGGGAGTGACCTTTCCTGTTGTCTTTCTG AGTGATTCTAGGACTTCCCG
Downstream 100 bases:
>100_bases TTGAGTCTTACGGAAGCAGGGGCTTTTTTTCAAGCTTGCCAATTATCACGGCTAGTACATGAGAGAAGGAAATCTGACCC AAGTTGCCTGTTTCTTGATC
Product: pyruvate phosphate dikinase
Products: NA
Alternate protein names: Pyruvate, orthophosphate dikinase [H]
Number of amino acids: Translated: 867; Mature: 866
Protein sequence:
>867_residues MSEKLVYHFSPSNADGDALMLDVLGGKGANLAQMCNMGLPVPPGFTISSSACELYHRDKDLFRKILEKEIQKSLQVLEAV TGKVFGSKVRPLLVSVRSGSKFSMPGMLDTILNVGLNDEIIASCSSRFILDSYRRLIQMYGDVVLKVESYHFEEVLYNYK NSKGILRDHDLSISDLHELIEAFREVVKRNSHASLPEDVYVQVMACIEAVFQSWGNERAKTYRKIHDIPESVGTAVNIQS MVFGNFNERSGSGVLFTRNPSNGHKTMFGEYMKCVQGEDIVSGVRTPQPIGELKSENPRLYEQIESVCQSLEKHYRDVQD IEFTIEDDALYILQTRSAKRSVEAAIRVAVDMVKEGLITKEEAVLRIRPKSLESLLHPRIDDEANHQIIGSGLPASPGAA SGKIIFSTEEAVKRAQGGEKVILVKSETSPEDIAGMHAAVAILTTRGGMTSHAAVVARGMGKPCVCALSGGSIDQYSQVL RITPDVTLNKGDEITIDGTSGNVILGNASTSEFSFSDEFSTFMTWVDEFRQISVRANAETKEDVEVALRFGADGIGLCRT EHMFFSEDRIHIVRDMIVAEDLRQRSIALKKLLPIQQGCFAAIFREMQGRCVTVRLLDPPLHEFLPADEASLESFRKHSA LEDSFIQRRIKVLKEENPMLGHRGCRIAISHPEIYEMQLHAIFGAAQEVGDVKLEVMIPFIMNADELCAIKQLVTSVAQG YSVDYLLGNMIELPSAAILADRIAESSDFFSFGTNDLTQTTLGISRDDCGMFMNIYKEKGLFREDPFISIQVESVGFLIK EAIKKGRSANKALKIGICGEHGGDPYSVEFFASSGVDYVSCSPYRVPIAKVAAAQHSIKMKQNNETL
Sequences:
>Translated_867_residues MSEKLVYHFSPSNADGDALMLDVLGGKGANLAQMCNMGLPVPPGFTISSSACELYHRDKDLFRKILEKEIQKSLQVLEAV TGKVFGSKVRPLLVSVRSGSKFSMPGMLDTILNVGLNDEIIASCSSRFILDSYRRLIQMYGDVVLKVESYHFEEVLYNYK NSKGILRDHDLSISDLHELIEAFREVVKRNSHASLPEDVYVQVMACIEAVFQSWGNERAKTYRKIHDIPESVGTAVNIQS MVFGNFNERSGSGVLFTRNPSNGHKTMFGEYMKCVQGEDIVSGVRTPQPIGELKSENPRLYEQIESVCQSLEKHYRDVQD IEFTIEDDALYILQTRSAKRSVEAAIRVAVDMVKEGLITKEEAVLRIRPKSLESLLHPRIDDEANHQIIGSGLPASPGAA SGKIIFSTEEAVKRAQGGEKVILVKSETSPEDIAGMHAAVAILTTRGGMTSHAAVVARGMGKPCVCALSGGSIDQYSQVL RITPDVTLNKGDEITIDGTSGNVILGNASTSEFSFSDEFSTFMTWVDEFRQISVRANAETKEDVEVALRFGADGIGLCRT EHMFFSEDRIHIVRDMIVAEDLRQRSIALKKLLPIQQGCFAAIFREMQGRCVTVRLLDPPLHEFLPADEASLESFRKHSA LEDSFIQRRIKVLKEENPMLGHRGCRIAISHPEIYEMQLHAIFGAAQEVGDVKLEVMIPFIMNADELCAIKQLVTSVAQG YSVDYLLGNMIELPSAAILADRIAESSDFFSFGTNDLTQTTLGISRDDCGMFMNIYKEKGLFREDPFISIQVESVGFLIK EAIKKGRSANKALKIGICGEHGGDPYSVEFFASSGVDYVSCSPYRVPIAKVAAAQHSIKMKQNNETL >Mature_866_residues SEKLVYHFSPSNADGDALMLDVLGGKGANLAQMCNMGLPVPPGFTISSSACELYHRDKDLFRKILEKEIQKSLQVLEAVT GKVFGSKVRPLLVSVRSGSKFSMPGMLDTILNVGLNDEIIASCSSRFILDSYRRLIQMYGDVVLKVESYHFEEVLYNYKN SKGILRDHDLSISDLHELIEAFREVVKRNSHASLPEDVYVQVMACIEAVFQSWGNERAKTYRKIHDIPESVGTAVNIQSM VFGNFNERSGSGVLFTRNPSNGHKTMFGEYMKCVQGEDIVSGVRTPQPIGELKSENPRLYEQIESVCQSLEKHYRDVQDI EFTIEDDALYILQTRSAKRSVEAAIRVAVDMVKEGLITKEEAVLRIRPKSLESLLHPRIDDEANHQIIGSGLPASPGAAS GKIIFSTEEAVKRAQGGEKVILVKSETSPEDIAGMHAAVAILTTRGGMTSHAAVVARGMGKPCVCALSGGSIDQYSQVLR ITPDVTLNKGDEITIDGTSGNVILGNASTSEFSFSDEFSTFMTWVDEFRQISVRANAETKEDVEVALRFGADGIGLCRTE HMFFSEDRIHIVRDMIVAEDLRQRSIALKKLLPIQQGCFAAIFREMQGRCVTVRLLDPPLHEFLPADEASLESFRKHSAL EDSFIQRRIKVLKEENPMLGHRGCRIAISHPEIYEMQLHAIFGAAQEVGDVKLEVMIPFIMNADELCAIKQLVTSVAQGY SVDYLLGNMIELPSAAILADRIAESSDFFSFGTNDLTQTTLGISRDDCGMFMNIYKEKGLFREDPFISIQVESVGFLIKE AIKKGRSANKALKIGICGEHGGDPYSVEFFASSGVDYVSCSPYRVPIAKVAAAQHSIKMKQNNETL
Specific function: Catalyzes the reversible phosphorylation of pyruvate and phosphate [H]
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PEP-utilizing enzyme family [H]
Homologues:
Organism=Escherichia coli, GI1788756, Length=448, Percent_Identity=28.5714285714286, Blast_Score=132, Evalue=1e-31, Organism=Escherichia coli, GI1787994, Length=695, Percent_Identity=23.8848920863309, Blast_Score=111, Evalue=2e-25, Organism=Escherichia coli, GI1789193, Length=461, Percent_Identity=24.5119305856833, Blast_Score=102, Evalue=1e-22, Organism=Escherichia coli, GI48994992, Length=435, Percent_Identity=24.367816091954, Blast_Score=99, Evalue=1e-21, Organism=Escherichia coli, GI1788726, Length=457, Percent_Identity=23.8512035010941, Blast_Score=92, Evalue=2e-19,
Paralogues:
None
Copy number: 360 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2659 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 4,000 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013815 - InterPro: IPR013816 - InterPro: IPR008279 - InterPro: IPR018274 - InterPro: IPR023151 - InterPro: IPR000121 - InterPro: IPR002192 - InterPro: IPR010121 - InterPro: IPR015813 [H]
Pfam domain/function: PF00391 PEP-utilizers; PF02896 PEP-utilizers_C; PF01326 PPDK_N [H]
EC number: =2.7.9.1 [H]
Molecular weight: Translated: 95926; Mature: 95795
Theoretical pI: Translated: 5.73; Mature: 5.73
Prosite motif: PS00370 PEP_ENZYMES_PHOS_SITE ; PS00742 PEP_ENZYMES_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEKLVYHFSPSNADGDALMLDVLGGKGANLAQMCNMGLPVPPGFTISSSACELYHRDKD CCCCEEEEECCCCCCCCEEEEEECCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHCCHH LFRKILEKEIQKSLQVLEAVTGKVFGSKVRPLLVSVRSGSKFSMPGMLDTILNVGLNDEI HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCHHH IASCSSRFILDSYRRLIQMYGDVVLKVESYHFEEVLYNYKNSKGILRDHDLSISDLHELI HHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH EAFREVVKRNSHASLPEDVYVQVMACIEAVFQSWGNERAKTYRKIHDIPESVGTAVNIQS HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHCCEEEEHH MVFGNFNERSGSGVLFTRNPSNGHKTMFGEYMKCVQGEDIVSGVRTPQPIGELKSENPRL HEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCHHHHCCCCCHH YEQIESVCQSLEKHYRDVQDIEFTIEDDALYILQTRSAKRSVEAAIRVAVDMVKEGLITK HHHHHHHHHHHHHHCCCHHHEEEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC EEAVLRIRPKSLESLLHPRIDDEANHQIIGSGLPASPGAASGKIIFSTEEAVKRAQGGEK CCCEEEECHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCEEEEECHHHHHHHCCCCE VILVKSETSPEDIAGMHAAVAILTTRGGMTSHAAVVARGMGKPCVCALSGGSIDQYSQVL EEEEECCCCCHHHHHHHHHEEEEEECCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHHHE RITPDVTLNKGDEITIDGTSGNVILGNASTSEFSFSDEFSTFMTWVDEFRQISVRANAET EECCCEEECCCCEEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHEEEEEECCCC KEDVEVALRFGADGIGLCRTEHMFFSEDRIHIVRDMIVAEDLRQRSIALKKLLPIQQGCF HHHHHHHHHCCCCCCCEEEECCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH AAIFREMQGRCVTVRLLDPPLHEFLPADEASLESFRKHSALEDSFIQRRIKVLKEENPML HHHHHHHCCCEEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC GHRGCRIAISHPEIYEMQLHAIFGAAQEVGDVKLEVMIPFIMNADELCAIKQLVTSVAQG CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEEHHCCCHHHHHHHHHHHHHHCC YSVDYLLGNMIELPSAAILADRIAESSDFFSFGTNDLTQTTLGISRDDCGMFMNIYKEKG CEEHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHCC LFREDPFISIQVESVGFLIKEAIKKGRSANKALKIGICGEHGGDPYSVEFFASSGVDYVS CCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEE CSPYRVPIAKVAAAQHSIKMKQNNETL CCCCCCHHHHHHHHHHHEEECCCCCCC >Mature Secondary Structure SEKLVYHFSPSNADGDALMLDVLGGKGANLAQMCNMGLPVPPGFTISSSACELYHRDKD CCCEEEEECCCCCCCCEEEEEECCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHCCHH LFRKILEKEIQKSLQVLEAVTGKVFGSKVRPLLVSVRSGSKFSMPGMLDTILNVGLNDEI HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHCCCCHHH IASCSSRFILDSYRRLIQMYGDVVLKVESYHFEEVLYNYKNSKGILRDHDLSISDLHELI HHHHHHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH EAFREVVKRNSHASLPEDVYVQVMACIEAVFQSWGNERAKTYRKIHDIPESVGTAVNIQS HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHCCEEEEHH MVFGNFNERSGSGVLFTRNPSNGHKTMFGEYMKCVQGEDIVSGVRTPQPIGELKSENPRL HEECCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHCCCCCCCHHHHCCCCCHH YEQIESVCQSLEKHYRDVQDIEFTIEDDALYILQTRSAKRSVEAAIRVAVDMVKEGLITK HHHHHHHHHHHHHHCCCHHHEEEEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC EEAVLRIRPKSLESLLHPRIDDEANHQIIGSGLPASPGAASGKIIFSTEEAVKRAQGGEK CCCEEEECHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCEEEEECHHHHHHHCCCCE VILVKSETSPEDIAGMHAAVAILTTRGGMTSHAAVVARGMGKPCVCALSGGSIDQYSQVL EEEEECCCCCHHHHHHHHHEEEEEECCCCCHHHHHHHHCCCCCEEEEECCCCHHHHHHHE RITPDVTLNKGDEITIDGTSGNVILGNASTSEFSFSDEFSTFMTWVDEFRQISVRANAET EECCCEEECCCCEEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHEEEEEECCCC KEDVEVALRFGADGIGLCRTEHMFFSEDRIHIVRDMIVAEDLRQRSIALKKLLPIQQGCF HHHHHHHHHCCCCCCCEEEECCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH AAIFREMQGRCVTVRLLDPPLHEFLPADEASLESFRKHSALEDSFIQRRIKVLKEENPML HHHHHHHCCCEEEEEEECCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC GHRGCRIAISHPEIYEMQLHAIFGAAQEVGDVKLEVMIPFIMNADELCAIKQLVTSVAQG CCCCCEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEEHHCCCHHHHHHHHHHHHHHCC YSVDYLLGNMIELPSAAILADRIAESSDFFSFGTNDLTQTTLGISRDDCGMFMNIYKEKG CEEHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHCC LFREDPFISIQVESVGFLIKEAIKKGRSANKALKIGICGEHGGDPYSVEFFASSGVDYVS CCCCCCEEEEEEHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEE CSPYRVPIAKVAAAQHSIKMKQNNETL CCCCCCHHHHHHHHHHHEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11481430; 9168612 [H]