Click here to switch to the map view.

The map label for this gene is 88608450

Identifier: 88608450

GI number: 88608450

Start: 67388

End: 68098

Strand: Reverse

Name: 88608450

Synonym: NSE_0078

Alternate gene names: NA

Gene position: 68098-67388 (Counterclockwise)

Preceding gene: 88608483

Following gene: 88608868

Centisome position: 7.93

GC content: 48.24

Gene sequence:

>711_bases
ATGAGTAACGGTTCAGAGACTTCTCATTCCAGAAGCAACACAGTAAGACGCGGAGCACGCAGGCTCGTCGCTGGAGTTGG
ATTTTATGCTGCATATACAGGGCTCGTACTTCTTTGGGCAATATTCGTAGTGGCGTATACTGCTTTGCAATTTCTCGATC
AAAAAGACTGGAGCATCATATGCGGAGGTGACGGAGCGGTAGCACGTGGTATGCTTGCTGCAGCTGCTCTGCTTGTGTGC
TTGGCCACGCTTTTGTTTGCATCTCAATCTAAAATGCACCCAGATCTTTGCCGTAAGAAGGTAGAATCCCTCTGTCAAAG
CAAGCCGGATCTGGAAGATGTATTGATAGAGGCAGACGGAGCTAGAACAGGGAATGGAGCTAAGGTTGTGCTTAGTGTCG
CAACGGTACTGGCAGCCATTGCAGTAGTACTATACCCGGCGATGTTTAAATTCGCTGGAGTTAGTAATAATAATCTTTAT
TCTCGTGTGGGTGAGGTACTTGCTCTTGTTCTTGCTATATCCGCACTGCTTGCTTTGACGCTTGTAGCAGTAAAAACTGA
TAGAGCTGCCTCTGTGATGTGGGCAGCGCGTGACATTGCAGCCCAGCCAGGGCCACAGCCAGATTCAAAACTACTCTCTG
GTAATCAAGGGGTGTCCGTGACCGAAGAAGGATCAATGAGAGAAGATGAGTCTCTGCTGCTTTTCTCTTGA

Upstream 100 bases:

>100_bases
TAGAATAGGATCTATGATGAAAATATGCTAATTTATTGACATGAGATAAAGAAAATAGTTAGTATTTAAATAATTATTTA
CATTTTCATCAGCTATCTTT

Downstream 100 bases:

>100_bases
GATTGGTACAGAAGTAAAGCAGACTCGCTTTTAGCCCAAAGGCAATCTTTACTGGGCTACGTATTTTTTCTTAACCACTA
CGGATATTTATCCTTCCGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MSNGSETSHSRSNTVRRGARRLVAGVGFYAAYTGLVLLWAIFVVAYTALQFLDQKDWSIICGGDGAVARGMLAAAALLVC
LATLLFASQSKMHPDLCRKKVESLCQSKPDLEDVLIEADGARTGNGAKVVLSVATVLAAIAVVLYPAMFKFAGVSNNNLY
SRVGEVLALVLAISALLALTLVAVKTDRAASVMWAARDIAAQPGPQPDSKLLSGNQGVSVTEEGSMREDESLLLFS

Sequences:

>Translated_236_residues
MSNGSETSHSRSNTVRRGARRLVAGVGFYAAYTGLVLLWAIFVVAYTALQFLDQKDWSIICGGDGAVARGMLAAAALLVC
LATLLFASQSKMHPDLCRKKVESLCQSKPDLEDVLIEADGARTGNGAKVVLSVATVLAAIAVVLYPAMFKFAGVSNNNLY
SRVGEVLALVLAISALLALTLVAVKTDRAASVMWAARDIAAQPGPQPDSKLLSGNQGVSVTEEGSMREDESLLLFS
>Mature_235_residues
SNGSETSHSRSNTVRRGARRLVAGVGFYAAYTGLVLLWAIFVVAYTALQFLDQKDWSIICGGDGAVARGMLAAAALLVCL
ATLLFASQSKMHPDLCRKKVESLCQSKPDLEDVLIEADGARTGNGAKVVLSVATVLAAIAVVLYPAMFKFAGVSNNNLYS
RVGEVLALVLAISALLALTLVAVKTDRAASVMWAARDIAAQPGPQPDSKLLSGNQGVSVTEEGSMREDESLLLFS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24877; Mature: 24746

Theoretical pI: Translated: 7.93; Mature: 7.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNGSETSHSRSNTVRRGARRLVAGVGFYAAYTGLVLLWAIFVVAYTALQFLDQKDWSII
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
CGGDGAVARGMLAAAALLVCLATLLFASQSKMHPDLCRKKVESLCQSKPDLEDVLIEADG
ECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHEECCC
ARTGNGAKVVLSVATVLAAIAVVLYPAMFKFAGVSNNNLYSRVGEVLALVLAISALLALT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LVAVKTDRAASVMWAARDIAAQPGPQPDSKLLSGNQGVSVTEEGSMREDESLLLFS
HHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEECC
>Mature Secondary Structure 
SNGSETSHSRSNTVRRGARRLVAGVGFYAAYTGLVLLWAIFVVAYTALQFLDQKDWSII
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
CGGDGAVARGMLAAAALLVCLATLLFASQSKMHPDLCRKKVESLCQSKPDLEDVLIEADG
ECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHEECCC
ARTGNGAKVVLSVATVLAAIAVVLYPAMFKFAGVSNNNLYSRVGEVLALVLAISALLALT
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
LVAVKTDRAASVMWAARDIAAQPGPQPDSKLLSGNQGVSVTEEGSMREDESLLLFS
HHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA