| Definition | Neorickettsia sennetsu str. Miyayama chromosome, complete genome. |
|---|---|
| Accession | NC_007798 |
| Length | 859,006 |
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The map label for this gene is alaS
Identifier: 88608446
GI number: 88608446
Start: 124722
End: 127268
Strand: Reverse
Name: alaS
Synonym: NSE_0156
Alternate gene names: 88608446
Gene position: 127268-124722 (Counterclockwise)
Preceding gene: 88608464
Following gene: 88608137
Centisome position: 14.82
GC content: 41.46
Gene sequence:
>2547_bases ATGATAGACGGCCTCAGAAAAAAATTCATAGATTTTTTCGTCAAAAACGGACACACATACCTTCCTTCTGCATCCTTAGT ACCGAAAGACGATCCTTCACTGATGTTCGTCAACGCGGGTATGGTTCCATTTAAGGAGTACTTTGTGGATGTCAGAAGAG CACCATTCTCGAGCATCGTAACAGCACAAAAATGCGTGAGGGCTGGAGGTAAACACAATGACTTGGAAAACGTTGGATTT ACAAAACGGCACCACACCTTTTTTGAGATGCTGGGAAATTTCAGCTTTGGCTGCTATTTCAAGGAAAGAGCAATAGAGTT AGCTTGGAAATTTGTCACTGAAGAACTCACGTTAAGTAAGAAAAAACTGTACATTACAGTCTACCACGAGGACGATGAAG CGTTCGAGATTTGGGATAAATTAACAGGCTTCGGGGAAAGAAAAATCAAGAGAATTAGCACAAGTGATAATTTCTGGCAG ATGGGTGATATTGGCCCGTGTGGTCCCTGCTCAGAGATCTTTTATGACCATGGAGAACACTTATCCGGTGACATACCTGA AGATAAAAAGGACCCCGGGGAAAGATACGTCGAGATATGGAACCTCGTTTTCATGCAGTACATAAGGGAACAAAGCGGAG AACTGGCGCGCATGGAGTGTCCGTGTATAGATACAGGAATGGGGCTAGAAAGGGTGGCCGCAATTCTAGAGGGTACAGAT GATAACTATAAAACAAAATTGTTCGAAGCCATTGTAAAGGAATCACAAAATGTTACCGGCAACAAAGACAATCAAGCTGC GCACAAAGTAATAGCCGATCATTTACGTTCTGCTAGTTTTCTTATAGCGGATGGTGTTTTACCAGGTAATACTGGACGTG AGTATGTCTTGAGGAGAATAATACGCAGAGCAGTACGGTACTCGCATGCACTTGGTTTTGATACGGTATTATTACCAAAG CTTTTTTGGGTACTTAAGGAGTGGATGGGTAGTCATTACCAGGAACTCACAAGAGCTGAGAATCTCATTTTAGATACATT AACACTAGAAGAACAATCTTTTCGAAACACACTCAAGTCAGGAATGAAATTACTCGAGGAAGTTTCAAGCTCTATGAAGG AGGGCGATACATTATCTGGAGACATAGCATTCACACTATATGATACCCACGGATTCCCATTGGATATAACGGTAGACATC TTAAAAGAGAGAAAAATTTCAGTCGATGAAGAAGGTTTTGCAGAAAGGATGAAAATGCAAAGGCTCCTTGCTCAAGCTTC TCGGATGAAGGATATGGCACAAACCTCAAGTTATGAGGTAAAAGCAGTGTTCCTAGAGCACGGAAAAACACCTTTTATTG GTTATGAAAATTTTACAGGATTAGCGCTTATCCTTGCGATAACAGAAAAAGAGGGATCTAACAAACTGACAATTATACTT GACCAAACGATTTTCTACCCAGAATCAGGTGGTCAAGAGAGCGATCAAGGCATAATAGAAGGAGAAAATACCCTGCTGAA GGTAGAAAAAGTCTACAAATCTACTGAGGGAGTTATCCTCCATGAGTGTACGATCATCAGGGGTCAAGTAACGAGTAGAG GCGAGAAAGTAAACCTCAAGATAGATATAAATCGCAGAAACAGCCTAGCCAGGAACCACTCGGCAACGCATATACTACAT CATGTTTTGAGAAAAAGGCTTGGTGCACATGTCTCGCAACGTGGCTCTCTCGTGGCACCGAGTAGGTTGCGTTTCGATTT TAGTCACAGCCAATCTATCACGGAGGAAGAGCTTTCTAAAATAGAGGACTGTATAAACCTTATGATCTGGGATGATCATC CTGTAATGACAGAAATCAAAAAGACTGATGAGGCTATAAGAGATGGCGCCATTGGATTGTTCGGAGAAAAGTACGACGAT ACGGTTCGTGTTGTCTCAATAGGGGAAGCAGTAGAGCTATGCGGAGGTACGCACGTCAAAAAAAGTTCAGCCATTGGACT AGTAAAGATTTTATCGGCGTCATCTGTGGCTCACGGTGTTCGCAGAATAGAGGCAGTAACGCATCTTACTGCCTTACAAT ACATACGAGAAGCGGAACAAGCACAGCTTTATCAACTTACCGAACATCAAGCAAAGCTCAAAGCAATGCAAAAGAGCCAT CAAAAAGAGATTACACGCGTATATCAGTCCATTGTCACAAATGCAGAAGCCCGAACAGAAAGATATGGCTCAGTGGAAAT AATTACTAAAAATGTTCAGGGTATATCAAAAGAAATCCTGCTGAGTCTTGCATCAGAAATAAGACCCAAAACGGGGGTGC TAATTGTTCACACAGAACTGAGCGAAGCCCTATATTCGCTCATCATACTCGATAAGGAGATTTTCAAAAACATAAGTTTT ATAGATTCTATGAAAGAGACAATTGATAAATCGCACGGAAAAGTTACCCCTTCTGTACCATATGTCATTCAGGCCACATT TTCTAAAAAAGAGGATCTGGATCGCTGCCTAAAAAATTTATCTGAATTAGTAGTATCTACCTTTTAG
Upstream 100 bases:
>100_bases CCCTGCCTGCAAGACCTAGTAAGAAAATTGCTGTACTTTACTTTAAAGACCCGAAAACATATAACATTTACGTTCGTGTC CTGTGCATTGGGGTTACTTT
Downstream 100 bases:
>100_bases AAATCGTGTAAGTTCTAACCCTTTCCGCACAAAATTTCCAAAAAGTCTTGTGCTAAACGGGCCCTGCAATCTGAGCCTCT TGGAAAGCAAAAGTCCTTTT
Product: alanyl-tRNA synthetase
Products: NA
Alternate protein names: Alanine--tRNA ligase; AlaRS
Number of amino acids: Translated: 848; Mature: 848
Protein sequence:
>848_residues MIDGLRKKFIDFFVKNGHTYLPSASLVPKDDPSLMFVNAGMVPFKEYFVDVRRAPFSSIVTAQKCVRAGGKHNDLENVGF TKRHHTFFEMLGNFSFGCYFKERAIELAWKFVTEELTLSKKKLYITVYHEDDEAFEIWDKLTGFGERKIKRISTSDNFWQ MGDIGPCGPCSEIFYDHGEHLSGDIPEDKKDPGERYVEIWNLVFMQYIREQSGELARMECPCIDTGMGLERVAAILEGTD DNYKTKLFEAIVKESQNVTGNKDNQAAHKVIADHLRSASFLIADGVLPGNTGREYVLRRIIRRAVRYSHALGFDTVLLPK LFWVLKEWMGSHYQELTRAENLILDTLTLEEQSFRNTLKSGMKLLEEVSSSMKEGDTLSGDIAFTLYDTHGFPLDITVDI LKERKISVDEEGFAERMKMQRLLAQASRMKDMAQTSSYEVKAVFLEHGKTPFIGYENFTGLALILAITEKEGSNKLTIIL DQTIFYPESGGQESDQGIIEGENTLLKVEKVYKSTEGVILHECTIIRGQVTSRGEKVNLKIDINRRNSLARNHSATHILH HVLRKRLGAHVSQRGSLVAPSRLRFDFSHSQSITEEELSKIEDCINLMIWDDHPVMTEIKKTDEAIRDGAIGLFGEKYDD TVRVVSIGEAVELCGGTHVKKSSAIGLVKILSASSVAHGVRRIEAVTHLTALQYIREAEQAQLYQLTEHQAKLKAMQKSH QKEITRVYQSIVTNAEARTERYGSVEIITKNVQGISKEILLSLASEIRPKTGVLIVHTELSEALYSLIILDKEIFKNISF IDSMKETIDKSHGKVTPSVPYVIQATFSKKEDLDRCLKNLSELVVSTF
Sequences:
>Translated_848_residues MIDGLRKKFIDFFVKNGHTYLPSASLVPKDDPSLMFVNAGMVPFKEYFVDVRRAPFSSIVTAQKCVRAGGKHNDLENVGF TKRHHTFFEMLGNFSFGCYFKERAIELAWKFVTEELTLSKKKLYITVYHEDDEAFEIWDKLTGFGERKIKRISTSDNFWQ MGDIGPCGPCSEIFYDHGEHLSGDIPEDKKDPGERYVEIWNLVFMQYIREQSGELARMECPCIDTGMGLERVAAILEGTD DNYKTKLFEAIVKESQNVTGNKDNQAAHKVIADHLRSASFLIADGVLPGNTGREYVLRRIIRRAVRYSHALGFDTVLLPK LFWVLKEWMGSHYQELTRAENLILDTLTLEEQSFRNTLKSGMKLLEEVSSSMKEGDTLSGDIAFTLYDTHGFPLDITVDI LKERKISVDEEGFAERMKMQRLLAQASRMKDMAQTSSYEVKAVFLEHGKTPFIGYENFTGLALILAITEKEGSNKLTIIL DQTIFYPESGGQESDQGIIEGENTLLKVEKVYKSTEGVILHECTIIRGQVTSRGEKVNLKIDINRRNSLARNHSATHILH HVLRKRLGAHVSQRGSLVAPSRLRFDFSHSQSITEEELSKIEDCINLMIWDDHPVMTEIKKTDEAIRDGAIGLFGEKYDD TVRVVSIGEAVELCGGTHVKKSSAIGLVKILSASSVAHGVRRIEAVTHLTALQYIREAEQAQLYQLTEHQAKLKAMQKSH QKEITRVYQSIVTNAEARTERYGSVEIITKNVQGISKEILLSLASEIRPKTGVLIVHTELSEALYSLIILDKEIFKNISF IDSMKETIDKSHGKVTPSVPYVIQATFSKKEDLDRCLKNLSELVVSTF >Mature_848_residues MIDGLRKKFIDFFVKNGHTYLPSASLVPKDDPSLMFVNAGMVPFKEYFVDVRRAPFSSIVTAQKCVRAGGKHNDLENVGF TKRHHTFFEMLGNFSFGCYFKERAIELAWKFVTEELTLSKKKLYITVYHEDDEAFEIWDKLTGFGERKIKRISTSDNFWQ MGDIGPCGPCSEIFYDHGEHLSGDIPEDKKDPGERYVEIWNLVFMQYIREQSGELARMECPCIDTGMGLERVAAILEGTD DNYKTKLFEAIVKESQNVTGNKDNQAAHKVIADHLRSASFLIADGVLPGNTGREYVLRRIIRRAVRYSHALGFDTVLLPK LFWVLKEWMGSHYQELTRAENLILDTLTLEEQSFRNTLKSGMKLLEEVSSSMKEGDTLSGDIAFTLYDTHGFPLDITVDI LKERKISVDEEGFAERMKMQRLLAQASRMKDMAQTSSYEVKAVFLEHGKTPFIGYENFTGLALILAITEKEGSNKLTIIL DQTIFYPESGGQESDQGIIEGENTLLKVEKVYKSTEGVILHECTIIRGQVTSRGEKVNLKIDINRRNSLARNHSATHILH HVLRKRLGAHVSQRGSLVAPSRLRFDFSHSQSITEEELSKIEDCINLMIWDDHPVMTEIKKTDEAIRDGAIGLFGEKYDD TVRVVSIGEAVELCGGTHVKKSSAIGLVKILSASSVAHGVRRIEAVTHLTALQYIREAEQAQLYQLTEHQAKLKAMQKSH QKEITRVYQSIVTNAEARTERYGSVEIITKNVQGISKEILLSLASEIRPKTGVLIVHTELSEALYSLIILDKEIFKNISF IDSMKETIDKSHGKVTPSVPYVIQATFSKKEDLDRCLKNLSELVVSTF
Specific function: Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction:alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editin
COG id: COG0013
COG function: function code J; Alanyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-II aminoacyl-tRNA synthetase family
Homologues:
Organism=Homo sapiens, GI109148542, Length=805, Percent_Identity=38.0124223602485, Blast_Score=472, Evalue=1e-133, Organism=Homo sapiens, GI38569417, Length=889, Percent_Identity=31.1586051743532, Blast_Score=388, Evalue=1e-107, Organism=Escherichia coli, GI1789048, Length=817, Percent_Identity=42.5948592411261, Blast_Score=641, Evalue=0.0, Organism=Caenorhabditis elegans, GI17506981, Length=840, Percent_Identity=34.4047619047619, Blast_Score=442, Evalue=1e-124, Organism=Caenorhabditis elegans, GI17536681, Length=740, Percent_Identity=32.7027027027027, Blast_Score=335, Evalue=5e-92, Organism=Saccharomyces cerevisiae, GI6324911, Length=769, Percent_Identity=39.0117035110533, Blast_Score=469, Evalue=1e-133, Organism=Saccharomyces cerevisiae, GI6324288, Length=220, Percent_Identity=26.3636363636364, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI24582809, Length=806, Percent_Identity=36.1042183622829, Blast_Score=452, Evalue=1e-127, Organism=Drosophila melanogaster, GI45552267, Length=806, Percent_Identity=36.1042183622829, Blast_Score=452, Evalue=1e-127, Organism=Drosophila melanogaster, GI24658214, Length=774, Percent_Identity=29.4573643410853, Blast_Score=306, Evalue=5e-83,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): SYA_NEOSM (Q2GEP2)
Other databases:
- EMBL: CP000237 - RefSeq: YP_506054.1 - ProteinModelPortal: Q2GEP2 - STRING: Q2GEP2 - GeneID: 3931384 - GenomeReviews: CP000237_GR - KEGG: nse:NSE_0156 - TIGR: NSE_0156 - eggNOG: COG0013 - HOGENOM: HBG354397 - OMA: GESKTDQ - PhylomeDB: Q2GEP2 - ProtClustDB: PRK00252 - BioCyc: NSEN222891:NSE_0156-MONOMER - GO: GO:0005737 - HAMAP: MF_00036_B - InterPro: IPR002318 - InterPro: IPR018162 - InterPro: IPR018165 - InterPro: IPR018164 - InterPro: IPR023033 - InterPro: IPR018163 - InterPro: IPR012947 - PRINTS: PR00980 - SMART: SM00863 - TIGRFAMs: TIGR00344
Pfam domain/function: PF01411 tRNA-synt_2c; PF07973 tRNA_SAD; SSF101353 Ala-tRNA-synth_IIc_anticod-bd; SSF55186 Thr/Ala-tRNA-synth_IIc_edit
EC number: =6.1.1.7
Molecular weight: Translated: 95938; Mature: 95938
Theoretical pI: Translated: 6.69; Mature: 6.69
Prosite motif: PS50860 AA_TRNA_LIGASE_II_ALA; PS00018 EF_HAND_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIDGLRKKFIDFFVKNGHTYLPSASLVPKDDPSLMFVNAGMVPFKEYFVDVRRAPFSSIV CCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHH TAQKCVRAGGKHNDLENVGFTKRHHTFFEMLGNFSFGCYFKERAIELAWKFVTEELTLSK HHHHHHHCCCCCCCCHHCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCCC KKLYITVYHEDDEAFEIWDKLTGFGERKIKRISTSDNFWQMGDIGPCGPCSEIFYDHGEH EEEEEEEEECCCHHHHHHHHHCCCCHHHHHHCCCCCCCEECCCCCCCCCHHHHHHCCCCC LSGDIPEDKKDPGERYVEIWNLVFMQYIREQSGELARMECPCIDTGMGLERVAAILEGTD CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHCCCC DNYKTKLFEAIVKESQNVTGNKDNQAAHKVIADHLRSASFLIADGVLPGNTGREYVLRRI CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHH IRRAVRYSHALGFDTVLLPKLFWVLKEWMGSHYQELTRAENLILDTLTLEEQSFRNTLKS HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GMKLLEEVSSSMKEGDTLSGDIAFTLYDTHGFPLDITVDILKERKISVDEEGFAERMKMQ HHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEHHHHHCCCCCCCHHHHHHHHHHH RLLAQASRMKDMAQTSSYEVKAVFLEHGKTPFIGYENFTGLALILAITEKEGSNKLTIIL HHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEECCCCCCCEEEEEEEECCCCCCEEEEEE DQTIFYPESGGQESDQGIIEGENTLLKVEKVYKSTEGVILHECTIIRGQVTSRGEKVNLK ECEEECCCCCCCCCCCCEEECCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCEEEEE IDINRRNSLARNHSATHILHHVLRKRLGAHVSQRGSLVAPSRLRFDFSHSQSITEEELSK EEECCCHHHHHCCHHHHHHHHHHHHHHCCCHHCCCCCCCCHHEEEECCCCCCCCHHHHHH IEDCINLMIWDDHPVMTEIKKTDEAIRDGAIGLFGEKYDDTVRVVSIGEAVELCGGTHVK HHHHHEEEEECCCCHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEHHHHHHHHCCCCCC KSSAIGLVKILSASSVAHGVRRIEAVTHLTALQYIREAEQAQLYQLTEHQAKLKAMQKSH CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QKEITRVYQSIVTNAEARTERYGSVEIITKNVQGISKEILLSLASEIRPKTGVLIVHTEL HHHHHHHHHHHHHCCHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEECHH SEALYSLIILDKEIFKNISFIDSMKETIDKSHGKVTPSVPYVIQATFSKKEDLDRCLKNL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHH SELVVSTF HHHHHHCC >Mature Secondary Structure MIDGLRKKFIDFFVKNGHTYLPSASLVPKDDPSLMFVNAGMVPFKEYFVDVRRAPFSSIV CCCHHHHHHHHHHHHCCCEECCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHCCHHHHH TAQKCVRAGGKHNDLENVGFTKRHHTFFEMLGNFSFGCYFKERAIELAWKFVTEELTLSK HHHHHHHCCCCCCCCHHCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHCCC KKLYITVYHEDDEAFEIWDKLTGFGERKIKRISTSDNFWQMGDIGPCGPCSEIFYDHGEH EEEEEEEEECCCHHHHHHHHHCCCCHHHHHHCCCCCCCEECCCCCCCCCHHHHHHCCCCC LSGDIPEDKKDPGERYVEIWNLVFMQYIREQSGELARMECPCIDTGMGLERVAAILEGTD CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHCCCC DNYKTKLFEAIVKESQNVTGNKDNQAAHKVIADHLRSASFLIADGVLPGNTGREYVLRRI CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHH IRRAVRYSHALGFDTVLLPKLFWVLKEWMGSHYQELTRAENLILDTLTLEEQSFRNTLKS HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GMKLLEEVSSSMKEGDTLSGDIAFTLYDTHGFPLDITVDILKERKISVDEEGFAERMKMQ HHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCEEEEHHHHHCCCCCCCHHHHHHHHHHH RLLAQASRMKDMAQTSSYEVKAVFLEHGKTPFIGYENFTGLALILAITEKEGSNKLTIIL HHHHHHHHHHHHHHCCCCEEEEEEEECCCCCEECCCCCCCEEEEEEEECCCCCCEEEEEE DQTIFYPESGGQESDQGIIEGENTLLKVEKVYKSTEGVILHECTIIRGQVTSRGEKVNLK ECEEECCCCCCCCCCCCEEECCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCEEEEE IDINRRNSLARNHSATHILHHVLRKRLGAHVSQRGSLVAPSRLRFDFSHSQSITEEELSK EEECCCHHHHHCCHHHHHHHHHHHHHHCCCHHCCCCCCCCHHEEEECCCCCCCCHHHHHH IEDCINLMIWDDHPVMTEIKKTDEAIRDGAIGLFGEKYDDTVRVVSIGEAVELCGGTHVK HHHHHEEEEECCCCHHHHHHHHHHHHHCCCCEECCCCCCCCEEEEEHHHHHHHHCCCCCC KSSAIGLVKILSASSVAHGVRRIEAVTHLTALQYIREAEQAQLYQLTEHQAKLKAMQKSH CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QKEITRVYQSIVTNAEARTERYGSVEIITKNVQGISKEILLSLASEIRPKTGVLIVHTEL HHHHHHHHHHHHHCCHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEECHH SEALYSLIILDKEIFKNISFIDSMKETIDKSHGKVTPSVPYVIQATFSKKEDLDRCLKNL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHHHH SELVVSTF HHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA