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The map label for this gene is rsmE [H]

Identifier: 88608373

GI number: 88608373

Start: 28338

End: 29021

Strand: Reverse

Name: rsmE [H]

Synonym: NSE_0036

Alternate gene names: 88608373

Gene position: 29021-28338 (Counterclockwise)

Preceding gene: 88608219

Following gene: 88608281

Centisome position: 3.38

GC content: 41.23

Gene sequence:

>684_bases
TTGTTCCTAAATGTTGAAACTATAGAAAAAGGTACAAAAATCTGTATAGATCCGAAAAAACAGCATTACCTATTCTCAGT
GATGCGCTTACAAAAAGAAGGTCAGGTTATAGTGTTCAACGGCAGGAGTGGTGAGTGGATAGCAAAAGTTAACCACAATT
TTTTGGTACCTGATATACAAATTCGACCACAAACAGCAAGTTACCCATATGATATCAATTTGTGCTTTGCAGTCCCAAAA
CACAAAGCGCTTAAGGAAATTGTTAGACAGGCGACAGAGCTAGATGTCACAGTGCTACGGCCAATATACTCATCGCGCAC
GGAAAATAAGAACAAGGATCTCGAAAAACTTGAGCTTTGGGCAATCGAAGCGGCACAACAATGTCGTCGGATGAGTATAC
CCGTTCTACTACCACCCATCGCACTAAAGGAAGTAGAAACATATCATGAAAACGTGTTCATTTGCGATGAAACACTTTCT
GACTCTGTTATCTGCGATATTCCTATCTTAAGCTCTTACACTATAGTCATTGGGCCAGAAGGAGGATTTTCCCATGAAGA
ACTCTCCTTGATTAACAAAAGAATCTCGCTAGGCAGAACTATATTGCGTTGTAGCACCGCAGCAACTTCTGCAATAGCTC
AGGTAAGGTCTGTGTATAGCCACCTCACGCGAACTCCTAAATGA

Upstream 100 bases:

>100_bases
TTCGTGACACTGGGAATAGGAAATACATAACATCATGCTCGCTTTGTTTATGTTAGAGTTGGGTGTTCTCCTCGTATAAT
CAGAAATGCGGCTTACAAGG

Downstream 100 bases:

>100_bases
AAAATTGAACTTTTCCACACATTTGGGATAATAGACCCCGTACTTGCTTTATGAGTATTAGAGGTGATTCGTTCTATTCA
CTTAGGAGCTGTATTGGTCG

Product: hypothetical protein

Products: NA

Alternate protein names: 16S rRNA m3U1498 methyltransferase [H]

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MFLNVETIEKGTKICIDPKKQHYLFSVMRLQKEGQVIVFNGRSGEWIAKVNHNFLVPDIQIRPQTASYPYDINLCFAVPK
HKALKEIVRQATELDVTVLRPIYSSRTENKNKDLEKLELWAIEAAQQCRRMSIPVLLPPIALKEVETYHENVFICDETLS
DSVICDIPILSSYTIVIGPEGGFSHEELSLINKRISLGRTILRCSTAATSAIAQVRSVYSHLTRTPK

Sequences:

>Translated_227_residues
MFLNVETIEKGTKICIDPKKQHYLFSVMRLQKEGQVIVFNGRSGEWIAKVNHNFLVPDIQIRPQTASYPYDINLCFAVPK
HKALKEIVRQATELDVTVLRPIYSSRTENKNKDLEKLELWAIEAAQQCRRMSIPVLLPPIALKEVETYHENVFICDETLS
DSVICDIPILSSYTIVIGPEGGFSHEELSLINKRISLGRTILRCSTAATSAIAQVRSVYSHLTRTPK
>Mature_227_residues
MFLNVETIEKGTKICIDPKKQHYLFSVMRLQKEGQVIVFNGRSGEWIAKVNHNFLVPDIQIRPQTASYPYDINLCFAVPK
HKALKEIVRQATELDVTVLRPIYSSRTENKNKDLEKLELWAIEAAQQCRRMSIPVLLPPIALKEVETYHENVFICDETLS
DSVICDIPILSSYTIVIGPEGGFSHEELSLINKRISLGRTILRCSTAATSAIAQVRSVYSHLTRTPK

Specific function: Specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [H]

COG id: COG1385

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase RsmE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001206
- InterPro:   IPR015947
- InterPro:   IPR006700 [H]

Pfam domain/function: PF04452 Methyltrans_RNA [H]

EC number: =2.1.1.193 [H]

Molecular weight: Translated: 25753; Mature: 25753

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLNVETIEKGTKICIDPKKQHYLFSVMRLQKEGQVIVFNGRSGEWIAKVNHNFLVPDIQ
CEEEHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCEECCCEE
IRPQTASYPYDINLCFAVPKHKALKEIVRQATELDVTVLRPIYSSRTENKNKDLEKLELW
ECCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCHHEEHHHHHCCCCCCCCCHHHHHHH
AIEAAQQCRRMSIPVLLPPIALKEVETYHENVFICDETLSDSVICDIPILSSYTIVIGPE
HHHHHHHHHHCCCCEEECCHHHHHHHHHHCCEEEECCCCCCCEEEEEEECCCEEEEECCC
GGFSHEELSLINKRISLGRTILRCSTAATSAIAQVRSVYSHLTRTPK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MFLNVETIEKGTKICIDPKKQHYLFSVMRLQKEGQVIVFNGRSGEWIAKVNHNFLVPDIQ
CEEEHHHHCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCEECCCEE
IRPQTASYPYDINLCFAVPKHKALKEIVRQATELDVTVLRPIYSSRTENKNKDLEKLELW
ECCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHCCHHEEHHHHHCCCCCCCCCHHHHHHH
AIEAAQQCRRMSIPVLLPPIALKEVETYHENVFICDETLSDSVICDIPILSSYTIVIGPE
HHHHHHHHHHCCCCEEECCHHHHHHHHHHCCEEEECCCCCCCEEEEEEECCCEEEEECCC
GGFSHEELSLINKRISLGRTILRCSTAATSAIAQVRSVYSHLTRTPK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]