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The map label for this gene is ycfF [C]

Identifier: 88608276

GI number: 88608276

Start: 338504

End: 338857

Strand: Direct

Name: ycfF [C]

Synonym: NSE_0413

Alternate gene names: 88608276

Gene position: 338504-338857 (Clockwise)

Preceding gene: 88608815

Following gene: 88608421

Centisome position: 39.41

GC content: 39.55

Gene sequence:

>354_bases
ATGTCTATGTACGATCAGCAGAATGTTTTCGCAAGGATATTGCGCCGTGAATTACCCTCTAGAGTTGTTTACGAAGATGA
TGGGGTTCTAGCTTTTTATGATGCGTTTCCTAAGGCTCCGGTGCATGTCCTTGTAATACCAAAAGGGCAGTTTGTTTCTT
TCAGTGATTTCATAAGCACAGCGCCGATTGAAGTTGCTTCTTTTTTTTCGAAGGTTGGTCATGTTATCGACCTTTTAGGT
GTGAAAGAAGCTGGATACAGACTTATTACAAATCATGGTGAAGATGGCGGTCAAATAGTAAAACACTTTCATGTGCATAT
TTTAGCTGGTAAGAAAATGTCTGATATAGCTTAG

Upstream 100 bases:

>100_bases
GCTTCCGCAACTTGTCTTTCTGGTAATTTTTTGCTGGCCGTTTCTCTCTGCGGCTTTTTTGGTGGTGGAATCGTTTCTGT
TTGATCCCTGGTTTTAGTGT

Downstream 100 bases:

>100_bases
CTATTCATGGTATAGTCGCTCGAATTTTCTCGATCCACATATTTCATTTGGGTATTGTGTTAGGCGAGTCTGTTAGTGAG
ATAAGGAGCCGGGTTTTGTT

Product: HIT domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 116

Protein sequence:

>117_residues
MSMYDQQNVFARILRRELPSRVVYEDDGVLAFYDAFPKAPVHVLVIPKGQFVSFSDFISTAPIEVASFFSKVGHVIDLLG
VKEAGYRLITNHGEDGGQIVKHFHVHILAGKKMSDIA

Sequences:

>Translated_117_residues
MSMYDQQNVFARILRRELPSRVVYEDDGVLAFYDAFPKAPVHVLVIPKGQFVSFSDFISTAPIEVASFFSKVGHVIDLLG
VKEAGYRLITNHGEDGGQIVKHFHVHILAGKKMSDIA
>Mature_116_residues
SMYDQQNVFARILRRELPSRVVYEDDGVLAFYDAFPKAPVHVLVIPKGQFVSFSDFISTAPIEVASFFSKVGHVIDLLGV
KEAGYRLITNHGEDGGQIVKHFHVHILAGKKMSDIA

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain [H]

Homologues:

Organism=Homo sapiens, GI4885413, Length=113, Percent_Identity=40.7079646017699, Blast_Score=87, Evalue=4e-18,
Organism=Homo sapiens, GI14211923, Length=110, Percent_Identity=38.1818181818182, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1787346, Length=108, Percent_Identity=37.037037037037, Blast_Score=80, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17506713, Length=107, Percent_Identity=35.5140186915888, Blast_Score=90, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24581222, Length=110, Percent_Identity=36.3636363636364, Blast_Score=80, Evalue=3e-16,
Organism=Drosophila melanogaster, GI28574010, Length=109, Percent_Identity=36.697247706422, Blast_Score=80, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310 [H]

Pfam domain/function: PF01230 HIT [H]

EC number: NA

Molecular weight: Translated: 13046; Mature: 12915

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS00892 HIT_1 ; PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMYDQQNVFARILRRELPSRVVYEDDGVLAFYDAFPKAPVHVLVIPKGQFVSFSDFIST
CCCCCHHHHHHHHHHHHCCCCEEECCCCEEEEECCCCCCCEEEEEECCCCEEEHHHHHCC
APIEVASFFSKVGHVIDLLGVKEAGYRLITNHGEDGGQIVKHFHVHILAGKKMSDIA
CCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHEEEEEECCCCCCCC
>Mature Secondary Structure 
SMYDQQNVFARILRRELPSRVVYEDDGVLAFYDAFPKAPVHVLVIPKGQFVSFSDFIST
CCCCHHHHHHHHHHHHCCCCEEECCCCEEEEECCCCCCCEEEEEECCCCEEEHHHHHCC
APIEVASFFSKVGHVIDLLGVKEAGYRLITNHGEDGGQIVKHFHVHILAGKKMSDIA
CCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]