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The map label for this gene is yfbS [C]

Identifier: 88608263

GI number: 88608263

Start: 127556

End: 129157

Strand: Direct

Name: yfbS [C]

Synonym: NSE_0158

Alternate gene names: 88608263

Gene position: 127556-129157 (Clockwise)

Preceding gene: 88608728

Following gene: 88608429

Centisome position: 14.85

GC content: 38.26

Gene sequence:

>1602_bases
GTGCTTAATCAATTACTAGTCGATCTTGCGCCTCTTTATGTGGTGTCTGTTCTGATTGTGAGTACCTACCTACTAGTGAA
TGGTAGCTCTACTACAGAGAGAATAACCTTTGTCTCAATTGTGCTACTTGTAGTTTATCAGAGTTTTACTCTTTCAAAAC
CATTAGCTTTTTTAGAGAGTACAATGATTGCACCCGTTATTGCCATACTTGGTTTGGCTATAATGGGGAGATTAGTTGCT
TGTACTAGCGTCGTTAACAGAGCTGCGGTTCTCATAGTAGAAATCAAGCATAAGGCACTCATACCAGTCATTTTGATACT
TTTGTGCTTCATACTGAGCGCCTTTGTTAACAATACACCTGTGGTGGTGCTTCTTATTTCATTTGTTTCCACATTTGGCA
AGCAAGTAGGTATAGCCAATTCCAGAATGATGCTCCCGATTGCTTTTTCTGCATCCCTTGGTGGAATGCTCACAGTTCTT
GGAAGTAGTACAAATTTCCTTATCTACTCAAAAGCTGAGGAGCTCGGTGTCGAATTAGGCTTCTTTGGATTCTTCTTACC
AGCGATATTTGTAGGCATTTTTGGGATCATTTATGTGATCTTTCTTACGTTGATACTTCCAATAAGAAAACCCGTAGAAG
AGCACGTTAGAAGATTCCTCTTTGTTTTGAACTCGTCTAAGTCTGGGAGATTGATTTTCTCTTCAGTCGGAATACATGAG
ATAAAAAATATTCTACATAATCACGTATTTGGTGATAATCTGATAATGAATGAGATCGTGATTACGGAAAAATCTGAATT
GATAGGCTATAGCATATTGTCCGATAACGTCGCGAGTTACTTTAATGCATGTGCTGTTGGTATAACGCACACTTCAGAGA
AGATAGTGCCTGGCTCTAGGTTAATTATTGTTTGTAAAGAAACGAGTCCCTATCATAGAGAGGGGGAAGTGTTTTTCGCA
AAAGATAAATCGTGCATTCTGAGTCATGCTAATAGCGTAAAGGTAATATGTGCTTTTATTGGTATGGTTCTTTTATCTGG
GATTTTGAAAATACCACTTGCTCTTACTGTTCTTTCTGGTCTTGCACTGTTGATTGTTTTGAATGCCGTTGACGTGAAAG
AGGTTTTCAGATTTCTCGAAGTAAAGCTGCTGCTTATGCTTGTTTACTCGCTTACTATAGGAACATCACTAGAAATGACA
GGTTTACCGGGGGATTTTGTGCAGCTTCTCTATCAATGTACCCGCACATTATCCCCTATTGCCCTAATCTGTATACTTTT
TGCTATAGTGACTTTACTGAACGAAGTTATGAGTAATAATGCAGTAGGATTAATTTTTACACCTGTTGTACTAAAACTCA
GCCACATGATGGGATTAGAGGCAAAGTATCTACTGTGGACGCTGATATTTGCATCCAATAGTGCTTTTGCTACACCGTTT
GGATATCAAGTTAACCTTATCGTCATGGAAGCAGGAAAGTACAAGTATTCTGATTATCTAAAGTTTGGTTTTCCACTTAA
TGTAGTTGTTTTAGTTGGCTATATTCTCTATTTGCACCTCTTTTCTGAGCTAGATTTCTTTCATTGTGTCTCTCATCAGT
AG

Upstream 100 bases:

>100_bases
CCGAAGATAACTTTTATACGGGATTCCTGTTTTATCATCAAAAAAAAGGCTTAATTTACGATATCCTGCAACCATCTGTA
GCTGTGCTTTTTTGTTTCCA

Downstream 100 bases:

>100_bases
ATGAGAGTTCATGATAGTTTTTCTGGCTTTTTGGTATGGATATTGCAATAGAGAAGTTTCTGTTTCTAAGTGGAAGGTGG
TAGTACTCATTGAACAACGT

Product: putative transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 533; Mature: 533

Protein sequence:

>533_residues
MLNQLLVDLAPLYVVSVLIVSTYLLVNGSSTTERITFVSIVLLVVYQSFTLSKPLAFLESTMIAPVIAILGLAIMGRLVA
CTSVVNRAAVLIVEIKHKALIPVILILLCFILSAFVNNTPVVVLLISFVSTFGKQVGIANSRMMLPIAFSASLGGMLTVL
GSSTNFLIYSKAEELGVELGFFGFFLPAIFVGIFGIIYVIFLTLILPIRKPVEEHVRRFLFVLNSSKSGRLIFSSVGIHE
IKNILHNHVFGDNLIMNEIVITEKSELIGYSILSDNVASYFNACAVGITHTSEKIVPGSRLIIVCKETSPYHREGEVFFA
KDKSCILSHANSVKVICAFIGMVLLSGILKIPLALTVLSGLALLIVLNAVDVKEVFRFLEVKLLLMLVYSLTIGTSLEMT
GLPGDFVQLLYQCTRTLSPIALICILFAIVTLLNEVMSNNAVGLIFTPVVLKLSHMMGLEAKYLLWTLIFASNSAFATPF
GYQVNLIVMEAGKYKYSDYLKFGFPLNVVVLVGYILYLHLFSELDFFHCVSHQ

Sequences:

>Translated_533_residues
MLNQLLVDLAPLYVVSVLIVSTYLLVNGSSTTERITFVSIVLLVVYQSFTLSKPLAFLESTMIAPVIAILGLAIMGRLVA
CTSVVNRAAVLIVEIKHKALIPVILILLCFILSAFVNNTPVVVLLISFVSTFGKQVGIANSRMMLPIAFSASLGGMLTVL
GSSTNFLIYSKAEELGVELGFFGFFLPAIFVGIFGIIYVIFLTLILPIRKPVEEHVRRFLFVLNSSKSGRLIFSSVGIHE
IKNILHNHVFGDNLIMNEIVITEKSELIGYSILSDNVASYFNACAVGITHTSEKIVPGSRLIIVCKETSPYHREGEVFFA
KDKSCILSHANSVKVICAFIGMVLLSGILKIPLALTVLSGLALLIVLNAVDVKEVFRFLEVKLLLMLVYSLTIGTSLEMT
GLPGDFVQLLYQCTRTLSPIALICILFAIVTLLNEVMSNNAVGLIFTPVVLKLSHMMGLEAKYLLWTLIFASNSAFATPF
GYQVNLIVMEAGKYKYSDYLKFGFPLNVVVLVGYILYLHLFSELDFFHCVSHQ
>Mature_533_residues
MLNQLLVDLAPLYVVSVLIVSTYLLVNGSSTTERITFVSIVLLVVYQSFTLSKPLAFLESTMIAPVIAILGLAIMGRLVA
CTSVVNRAAVLIVEIKHKALIPVILILLCFILSAFVNNTPVVVLLISFVSTFGKQVGIANSRMMLPIAFSASLGGMLTVL
GSSTNFLIYSKAEELGVELGFFGFFLPAIFVGIFGIIYVIFLTLILPIRKPVEEHVRRFLFVLNSSKSGRLIFSSVGIHE
IKNILHNHVFGDNLIMNEIVITEKSELIGYSILSDNVASYFNACAVGITHTSEKIVPGSRLIIVCKETSPYHREGEVFFA
KDKSCILSHANSVKVICAFIGMVLLSGILKIPLALTVLSGLALLIVLNAVDVKEVFRFLEVKLLLMLVYSLTIGTSLEMT
GLPGDFVQLLYQCTRTLSPIALICILFAIVTLLNEVMSNNAVGLIFTPVVLKLSHMMGLEAKYLLWTLIFASNSAFATPF
GYQVNLIVMEAGKYKYSDYLKFGFPLNVVVLVGYILYLHLFSELDFFHCVSHQ

Specific function: Unknown

COG id: COG0471

COG function: function code P; Di- and tricarboxylate transporters

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 RCK C-terminal domains [H]

Homologues:

Organism=Escherichia coli, GI1788629, Length=287, Percent_Identity=21.602787456446, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001898
- InterPro:   IPR006037 [H]

Pfam domain/function: PF00939 Na_sulph_symp; PF02080 TrkA_C [H]

EC number: NA

Molecular weight: Translated: 58562; Mature: 58562

Theoretical pI: Translated: 8.15; Mature: 8.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNQLLVDLAPLYVVSVLIVSTYLLVNGSSTTERITFVSIVLLVVYQSFTLSKPLAFLES
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
TMIAPVIAILGLAIMGRLVACTSVVNRAAVLIVEIKHKALIPVILILLCFILSAFVNNTP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCC
VVVLLISFVSTFGKQVGIANSRMMLPIAFSASLGGMLTVLGSSTNFLIYSKAEELGVELG
HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEECCCCCEEEEECHHHHCCHHH
FFGFFLPAIFVGIFGIIYVIFLTLILPIRKPVEEHVRRFLFVLNSSKSGRLIFSSVGIHE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEECCCHHH
IKNILHNHVFGDNLIMNEIVITEKSELIGYSILSDNVASYFNACAVGITHTSEKIVPGSR
HHHHHHHHCCCCCHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCE
LIIVCKETSPYHREGEVFFAKDKSCILSHANSVKVICAFIGMVLLSGILKIPLALTVLSG
EEEEECCCCCCCCCCCEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALLIVLNAVDVKEVFRFLEVKLLLMLVYSLTIGTSLEMTGLPGDFVQLLYQCTRTLSPI
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHCCCHH
ALICILFAIVTLLNEVMSNNAVGLIFTPVVLKLSHMMGLEAKYLLWTLIFASNSAFATPF
HHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCC
GYQVNLIVMEAGKYKYSDYLKFGFPLNVVVLVGYILYLHLFSELDFFHCVSHQ
CCEEEEEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCC
>Mature Secondary Structure
MLNQLLVDLAPLYVVSVLIVSTYLLVNGSSTTERITFVSIVLLVVYQSFTLSKPLAFLES
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
TMIAPVIAILGLAIMGRLVACTSVVNRAAVLIVEIKHKALIPVILILLCFILSAFVNNTP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCC
VVVLLISFVSTFGKQVGIANSRMMLPIAFSASLGGMLTVLGSSTNFLIYSKAEELGVELG
HHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCEEEECCCCCEEEEECHHHHCCHHH
FFGFFLPAIFVGIFGIIYVIFLTLILPIRKPVEEHVRRFLFVLNSSKSGRLIFSSVGIHE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEECCCHHH
IKNILHNHVFGDNLIMNEIVITEKSELIGYSILSDNVASYFNACAVGITHTSEKIVPGSR
HHHHHHHHCCCCCHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCE
LIIVCKETSPYHREGEVFFAKDKSCILSHANSVKVICAFIGMVLLSGILKIPLALTVLSG
EEEEECCCCCCCCCCCEEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LALLIVLNAVDVKEVFRFLEVKLLLMLVYSLTIGTSLEMTGLPGDFVQLLYQCTRTLSPI
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHCCCHH
ALICILFAIVTLLNEVMSNNAVGLIFTPVVLKLSHMMGLEAKYLLWTLIFASNSAFATPF
HHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCC
GYQVNLIVMEAGKYKYSDYLKFGFPLNVVVLVGYILYLHLFSELDFFHCVSHQ
CCEEEEEEEECCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]