Click here to switch to the map view.

The map label for this gene is 88608163

Identifier: 88608163

GI number: 88608163

Start: 70325

End: 71089

Strand: Reverse

Name: 88608163

Synonym: NSE_0083

Alternate gene names: NA

Gene position: 71089-70325 (Counterclockwise)

Preceding gene: 88607958

Following gene: 88608158

Centisome position: 8.28

GC content: 41.83

Gene sequence:

>765_bases
ATGCTTGCACATCCCCCAGCGAACACCAATTTAAGTCGCGTGTCTATCTCTTTAGTTACCTTGCAGTGCGTGTGCTCTGC
TATCTCGATTGGATGTATCATAAGTATTTTGCTACGCAACAAAAGTTCTCATGTGGAGCATTCACTCATTTTACTTCTCT
CCATCATCTCCTCAATATTCAGCATCCTACAGTACAGCATACAACTGAACCACCTTAATAAGATGATCGAAGAACATTCA
ACAGGCAATATTCAGCTGCCAGACAAAGCAAGCACAAAAACAGACGTATCATCAGCCAACAACGCGGATCAGTCATTGGT
TAGTGGTTTAACTTGGAACTATGCACATATGGACTTAACCAACAATGTAAGCCTAGACTCATGTATACGAGGAGGTAACT
TTACAGAGACAGAACTGTCCGACTTTCTGGCCTTCAATCAAACTATTGAAAGCAGTTACGACACTTGCATGATGGAGCAT
TTCCTTCGAGATGGAAATAGATTATTGACTTCAAGTAGAAACTCACTTTTTAGTGGCACTACTGAGGAAGAATACGCTCC
TACAGAATCCAGCCCTCAGAGCAAAGAAACGTACAAGTGCATGGTCTGTAGTGACCATATTCCGAGAAAGTTAACCTTGA
TCACTGATTATTTGCCTAGAGAAGTAAATGAGCATTCACTGCGGAGCAGTGTTATTGTAGAGCAATGCAGAACAGTCAAA
GACTCCTCTTCTGTGCCAAACATTGTGCAAGGACGACGTTTATAG

Upstream 100 bases:

>100_bases
TATACACTCATATAGTATGCATTAGCATGATGATATCACGCTAATATAGCAAAACTGAACAACTTTCTCCTATCCTTAGA
ACAGTGACAACTTTACTGCT

Downstream 100 bases:

>100_bases
CTGCCTTACTATATTGGTTGATTCGCGCTTACCTAAACCGTGCGCACGAAATTGGTTGTAGTGTCCGATACGTCAATCTG
CACACTAATGTATAGACAAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MLAHPPANTNLSRVSISLVTLQCVCSAISIGCIISILLRNKSSHVEHSLILLLSIISSIFSILQYSIQLNHLNKMIEEHS
TGNIQLPDKASTKTDVSSANNADQSLVSGLTWNYAHMDLTNNVSLDSCIRGGNFTETELSDFLAFNQTIESSYDTCMMEH
FLRDGNRLLTSSRNSLFSGTTEEEYAPTESSPQSKETYKCMVCSDHIPRKLTLITDYLPREVNEHSLRSSVIVEQCRTVK
DSSSVPNIVQGRRL

Sequences:

>Translated_254_residues
MLAHPPANTNLSRVSISLVTLQCVCSAISIGCIISILLRNKSSHVEHSLILLLSIISSIFSILQYSIQLNHLNKMIEEHS
TGNIQLPDKASTKTDVSSANNADQSLVSGLTWNYAHMDLTNNVSLDSCIRGGNFTETELSDFLAFNQTIESSYDTCMMEH
FLRDGNRLLTSSRNSLFSGTTEEEYAPTESSPQSKETYKCMVCSDHIPRKLTLITDYLPREVNEHSLRSSVIVEQCRTVK
DSSSVPNIVQGRRL
>Mature_254_residues
MLAHPPANTNLSRVSISLVTLQCVCSAISIGCIISILLRNKSSHVEHSLILLLSIISSIFSILQYSIQLNHLNKMIEEHS
TGNIQLPDKASTKTDVSSANNADQSLVSGLTWNYAHMDLTNNVSLDSCIRGGNFTETELSDFLAFNQTIESSYDTCMMEH
FLRDGNRLLTSSRNSLFSGTTEEEYAPTESSPQSKETYKCMVCSDHIPRKLTLITDYLPREVNEHSLRSSVIVEQCRTVK
DSSSVPNIVQGRRL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28231; Mature: 28231

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAHPPANTNLSRVSISLVTLQCVCSAISIGCIISILLRNKSSHVEHSLILLLSIISSIF
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
SILQYSIQLNHLNKMIEEHSTGNIQLPDKASTKTDVSSANNADQSLVSGLTWNYAHMDLT
HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEECCC
NNVSLDSCIRGGNFTETELSDFLAFNQTIESSYDTCMMEHFLRDGNRLLTSSRNSLFSGT
CCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHCCCC
TEEEYAPTESSPQSKETYKCMVCSDHIPRKLTLITDYLPREVNEHSLRSSVIVEQCRTVK
CCHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
DSSSVPNIVQGRRL
CCCCCCHHHCCCCC
>Mature Secondary Structure
MLAHPPANTNLSRVSISLVTLQCVCSAISIGCIISILLRNKSSHVEHSLILLLSIISSIF
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
SILQYSIQLNHLNKMIEEHSTGNIQLPDKASTKTDVSSANNADQSLVSGLTWNYAHMDLT
HHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCHHHHHHHCCCCCEEEECCC
NNVSLDSCIRGGNFTETELSDFLAFNQTIESSYDTCMMEHFLRDGNRLLTSSRNSLFSGT
CCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHCCCC
TEEEYAPTESSPQSKETYKCMVCSDHIPRKLTLITDYLPREVNEHSLRSSVIVEQCRTVK
CCHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
DSSSVPNIVQGRRL
CCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA