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The map label for this gene is recO [H]

Identifier: 88608141

GI number: 88608141

Start: 376571

End: 377284

Strand: Direct

Name: recO [H]

Synonym: NSE_0461

Alternate gene names: 88608141

Gene position: 376571-377284 (Clockwise)

Preceding gene: 88608797

Following gene: 88608394

Centisome position: 43.84

GC content: 36.55

Gene sequence:

>714_bases
ATGCAGTGGGAGAATGAAGGTATAGTTTTATCGAATAAAGGACTCGTCGAAAACAAAGCCGTAACAACTTTGTTTACTAA
GGACTATGGGTTAAAACGGGGTTTATGTAGTAGGAAGACAACAATTGATGTGGGAAACGTAGTCTACTGTAGATGGAGTG
GTCGATTGGAAGTACAGTTGGGCTACTTCAGAGTGGAAGTGAAAGAGATAATTTCTCCGTTTTTGTTTACCGATTATAAA
AAATTGAAGCTCCTTAATGCAGTTCTAAGTATTTTGCTTAAGGTTCTTCCAGAGAATGAACCACAGAAGGAAATTTATAA
AACATTTATCCAGTTGTTACAGGCATTTAAGTCGAACACCCTTTGTTATTATAGGCAGTATATAGAAATGGACTTGTCAA
TATTACAGTATTTGGGGTTTCAATTGGATTTGTCTCGTTGTGCAGTAACTGGAGAAACAAAAGATTTATTCTATATTTCT
CCAAAAACTGGTAGAGCTGTCACGAAAGCGGTCGGTGAAGCATACAAGGATAAACTACTTCTGTTACCACCATCACTATA
TAAAATTGCTAATGGCTTATCGATTGAGGAGATATCTCAGGAAGAGTTCTTGGATTGTATCAGAGTCACAACTTTTTTTC
TTCGTGCATTTCTGTTTCTCTTGCTGCATTTGGACCTTCCATTTCATAGAAAGGTTGTATTAAATGGGATATGA

Upstream 100 bases:

>100_bases
ACACAGACAATTCTTTAGTACCTGTGTCCTAGAGCGAGATTACTGATTTCTTTTCCGCTGAATAGGTAACAATTTCTAGT
TAGTAGTTGGTGATAAATCA

Downstream 100 bases:

>100_bases
GCATTTTTTTAGCTTTCACGCAAGTTGTGCATAGGAGGATATGAAAATGTATAGTGTTTCAAAGGCGTATTTGGTGATCG
TGAGTGCTTTTTATAGAGTC

Product: putative DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O [H]

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MQWENEGIVLSNKGLVENKAVTTLFTKDYGLKRGLCSRKTTIDVGNVVYCRWSGRLEVQLGYFRVEVKEIISPFLFTDYK
KLKLLNAVLSILLKVLPENEPQKEIYKTFIQLLQAFKSNTLCYYRQYIEMDLSILQYLGFQLDLSRCAVTGETKDLFYIS
PKTGRAVTKAVGEAYKDKLLLLPPSLYKIANGLSIEEISQEEFLDCIRVTTFFLRAFLFLLLHLDLPFHRKVVLNGI

Sequences:

>Translated_237_residues
MQWENEGIVLSNKGLVENKAVTTLFTKDYGLKRGLCSRKTTIDVGNVVYCRWSGRLEVQLGYFRVEVKEIISPFLFTDYK
KLKLLNAVLSILLKVLPENEPQKEIYKTFIQLLQAFKSNTLCYYRQYIEMDLSILQYLGFQLDLSRCAVTGETKDLFYIS
PKTGRAVTKAVGEAYKDKLLLLPPSLYKIANGLSIEEISQEEFLDCIRVTTFFLRAFLFLLLHLDLPFHRKVVLNGI
>Mature_237_residues
MQWENEGIVLSNKGLVENKAVTTLFTKDYGLKRGLCSRKTTIDVGNVVYCRWSGRLEVQLGYFRVEVKEIISPFLFTDYK
KLKLLNAVLSILLKVLPENEPQKEIYKTFIQLLQAFKSNTLCYYRQYIEMDLSILQYLGFQLDLSRCAVTGETKDLFYIS
PKTGRAVTKAVGEAYKDKLLLLPPSLYKIANGLSIEEISQEEFLDCIRVTTFFLRAFLFLLLHLDLPFHRKVVLNGI

Specific function: Involved in DNA repair and recF pathway recombination [H]

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR003717 [H]

Pfam domain/function: PF02565 RecO; PF11967 RecO_N [H]

EC number: NA

Molecular weight: Translated: 27343; Mature: 27343

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQWENEGIVLSNKGLVENKAVTTLFTKDYGLKRGLCSRKTTIDVGNVVYCRWSGRLEVQL
CCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCEEECCCEEEEEECCEEEEEE
GYFRVEVKEIISPFLFTDYKKLKLLNAVLSILLKVLPENEPQKEIYKTFIQLLQAFKSNT
HHHEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
LCYYRQYIEMDLSILQYLGFQLDLSRCAVTGETKDLFYISPKTGRAVTKAVGEAYKDKLL
HHHHHHHHHHHHHHHHHHCCCEEHHHHEECCCCCEEEEECCCCCHHHHHHHHHHHHCCEE
LLPPSLYKIANGLSIEEISQEEFLDCIRVTTFFLRAFLFLLLHLDLPFHRKVVLNGI
EECCHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEECCC
>Mature Secondary Structure
MQWENEGIVLSNKGLVENKAVTTLFTKDYGLKRGLCSRKTTIDVGNVVYCRWSGRLEVQL
CCCCCCCEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCCEEECCCEEEEEECCEEEEEE
GYFRVEVKEIISPFLFTDYKKLKLLNAVLSILLKVLPENEPQKEIYKTFIQLLQAFKSNT
HHHEEEHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
LCYYRQYIEMDLSILQYLGFQLDLSRCAVTGETKDLFYISPKTGRAVTKAVGEAYKDKLL
HHHHHHHHHHHHHHHHHHCCCEEHHHHEECCCCCEEEEECCCCCHHHHHHHHHHHHCCEE
LLPPSLYKIANGLSIEEISQEEFLDCIRVTTFFLRAFLFLLLHLDLPFHRKVVLNGI
EECCHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA