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The map label for this gene is 88608050

Identifier: 88608050

GI number: 88608050

Start: 371337

End: 371918

Strand: Direct

Name: 88608050

Synonym: NSE_0455

Alternate gene names: NA

Gene position: 371337-371918 (Clockwise)

Preceding gene: 88608200

Following gene: 88608280

Centisome position: 43.23

GC content: 38.66

Gene sequence:

>582_bases
ATGGAGTTTGTTTGCCTGCTTGTTGTTCTAGCTGTTTTTTTCTTTGTTTATCGGCAGACTTCAAGCAGGTCGGGTTCCGG
TGGATTACTCAGTTTGCTTGTTTGGGGCATTGTGATATGCCTGCTGGCCTCCATATACAACACTGGGGACAAGATTTTTC
AAAACAAACTGCTTGGTGAGATCTATGAGAAAGTTCAAAGTGGAATCTCGAATGAGCAGGTTGGTTTTAGAAAGGCGAGG
GATGGGCACTTTTATGTCGATATTGTTGTTAGTGGTGTGAAGCTAAAGTGTCTAGTTGATACAGGTGCTTCAGATACAGT
ATTATCACAAAAAGATGCTATAAGACTAGGAGTCGATCCTAGGACTCTAAACTACAGCAAGGAATATAATACTGCCAACG
GAAAGATAAGGGCAGCTCCTGTAATCTTAAGAGATGTATATCTAAGAAGTTATTACCTTCCTTACTTAGAGGTAAGTGTG
TCAGGAGTAAGAGAGCAGGAAAGATCCCTATTAGGGATGTCATTCTTAAAACATTTTGATTTTTTTATCAAAAAAGATGT
TTTATTTTTGCTACAAAAATGA

Upstream 100 bases:

>100_bases
ACGTGAAGGCAATCCTGATGTCTTTGCCCCCTGTGGTGGAGTGGAGAGATTTTTAAAGGTACTTTGCTATCCTTTCTCGT
CCAGTAGTTTGGTCTGATAC

Downstream 100 bases:

>100_bases
TCTTTTAGTTATCTAGCGAAAATTGGCGGTTTGTATTGTTCCTACTTCGGGATTATTTTTAATTTGTTATAGATCTCTTT
TAGAATTCAAATAGGATTCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MEFVCLLVVLAVFFFVYRQTSSRSGSGGLLSLLVWGIVICLLASIYNTGDKIFQNKLLGEIYEKVQSGISNEQVGFRKAR
DGHFYVDIVVSGVKLKCLVDTGASDTVLSQKDAIRLGVDPRTLNYSKEYNTANGKIRAAPVILRDVYLRSYYLPYLEVSV
SGVREQERSLLGMSFLKHFDFFIKKDVLFLLQK

Sequences:

>Translated_193_residues
MEFVCLLVVLAVFFFVYRQTSSRSGSGGLLSLLVWGIVICLLASIYNTGDKIFQNKLLGEIYEKVQSGISNEQVGFRKAR
DGHFYVDIVVSGVKLKCLVDTGASDTVLSQKDAIRLGVDPRTLNYSKEYNTANGKIRAAPVILRDVYLRSYYLPYLEVSV
SGVREQERSLLGMSFLKHFDFFIKKDVLFLLQK
>Mature_193_residues
MEFVCLLVVLAVFFFVYRQTSSRSGSGGLLSLLVWGIVICLLASIYNTGDKIFQNKLLGEIYEKVQSGISNEQVGFRKAR
DGHFYVDIVVSGVKLKCLVDTGASDTVLSQKDAIRLGVDPRTLNYSKEYNTANGKIRAAPVILRDVYLRSYYLPYLEVSV
SGVREQERSLLGMSFLKHFDFFIKKDVLFLLQK

Specific function: Unknown

COG id: COG3577

COG function: function code R; Predicted aspartyl protease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018061
- InterPro:   IPR011969
- InterPro:   IPR021109
- InterPro:   IPR001969 [H]

Pfam domain/function: PF00077 RVP [H]

EC number: NA

Molecular weight: Translated: 21769; Mature: 21769

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS00141 ASP_PROTEASE ; PS50175 ASP_PROT_RETROV

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFVCLLVVLAVFFFVYRQTSSRSGSGGLLSLLVWGIVICLLASIYNTGDKIFQNKLLGE
CHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
IYEKVQSGISNEQVGFRKARDGHFYVDIVVSGVKLKCLVDTGASDTVLSQKDAIRLGVDP
HHHHHHCCCCCCCCCCEECCCCCEEEEEEEECEEEEEEEECCCCCCHHCCCCCEEECCCC
RTLNYSKEYNTANGKIRAAPVILRDVYLRSYYLPYLEVSVSGVREQERSLLGMSFLKHFD
CCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHH
FFIKKDVLFLLQK
HHHHHHHHHHHCC
>Mature Secondary Structure
MEFVCLLVVLAVFFFVYRQTSSRSGSGGLLSLLVWGIVICLLASIYNTGDKIFQNKLLGE
CHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
IYEKVQSGISNEQVGFRKARDGHFYVDIVVSGVKLKCLVDTGASDTVLSQKDAIRLGVDP
HHHHHHCCCCCCCCCCEECCCCCEEEEEEEECEEEEEEEECCCCCCHHCCCCCEEECCCC
RTLNYSKEYNTANGKIRAAPVILRDVYLRSYYLPYLEVSVSGVREQERSLLGMSFLKHFD
CCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHCCCHHEEHHHHHHHHHHHHHHHHHHHHHH
FFIKKDVLFLLQK
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]