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The map label for this gene is perM [C]

Identifier: 88608019

GI number: 88608019

Start: 160394

End: 161377

Strand: Reverse

Name: perM [C]

Synonym: NSE_0191

Alternate gene names: 88608019

Gene position: 161377-160394 (Counterclockwise)

Preceding gene: 88608540

Following gene: 88608364

Centisome position: 18.79

GC content: 40.45

Gene sequence:

>984_bases
ATGCTTTTCGCCTTCGCATTTTCATTTATTCTCGCGTATTTTTTGAATCGCTCTACGACAAAGCTAGCAGCTCTCATTGG
ATCTAGAGGTATCGCATCCTTACTTGTTGTTGCTTTTCTCAGCATACTTGTCATCCTTGTTTTCTCACTTGCTATACCTC
TTCTTTATCATCAACTGATTCTCTTTCTTAAAGGAGCACCGCAACTAATTGCATACATAGAAAACTCAATTAAAATCTCT
TCTCCAGGCCTACATAGTTTTCTCGAAGAAAGGGGAATGTCCTCCTTATTTGAGTACATCTTATCTCTTGTGCCACAGCT
CTCGACTAAGATTACGCAACATTTATGGAATTCAACGCTCGTTTTAGCAAACATTGTGATCTTACTAATTTTCACTCCTG
TAATACTCTTTTATCTCCTCCAGGACTGGCCAAAAATGACAAACGCTATAAAGGAAATCATACCTCTGAAACACAGAACT
GCCTTCAGCAACCAGGTTACACTGATGGACGCAAGCATTTCCGGATATGTACTAGGACAGATGAAGATTTCGTTTATTTT
AGGTGTGTTGTATACAGTACTGCTCTTTTTTGCAGGAATGCCATATTATTTCCTAATTGGTGTATCTACGGGAATGCTAA
CAATTATCCCATATTTTGGGAACATAACGGGTCTTATAACGAGCCATCTAGTTGCTCTGTCTCGTGCCTCAAGTATCCTA
GATGTGTTACCAATCACGCTGATCTTCATCTTTTGCGGCGCAATTGAAGGTCTGTTCCTATCACCAAAACTTCTAAGTAA
GAGTGTGAACCTGCACCCATTATGGGTAATCTTCTCTATGACAGTCGGGGGTATGCTGTGCGGACTAGCAGGAATATTAC
TGGCCGTTCCTGTTGCAGCAACCGTTGCAGGATTTGTGCGACTAGGTATTTCTTACTACAAAGATAGCTCCTATTATAGA
GATGAGGCAACTAATACTGATTGA

Upstream 100 bases:

>100_bases
CAAAGCGGTACTGAAACAAACGCTGGACACGGAGGAATGAATGCTTTACATCTTAAGAGGTTGACACATAAATCTCCCTG
GTCTTTCTTACTGTATCCCA

Downstream 100 bases:

>100_bases
TAACCAAATTAGGCAGAATACCTACTCTGCTGCAGACTATTTTGTTTCAGAGAGTAATCTATCCATTTACAAATCGTTAG
TCGAAACGCCATTTAGTCAG

Product: PerM family permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MLFAFAFSFILAYFLNRSTTKLAALIGSRGIASLLVVAFLSILVILVFSLAIPLLYHQLILFLKGAPQLIAYIENSIKIS
SPGLHSFLEERGMSSLFEYILSLVPQLSTKITQHLWNSTLVLANIVILLIFTPVILFYLLQDWPKMTNAIKEIIPLKHRT
AFSNQVTLMDASISGYVLGQMKISFILGVLYTVLLFFAGMPYYFLIGVSTGMLTIIPYFGNITGLITSHLVALSRASSIL
DVLPITLIFIFCGAIEGLFLSPKLLSKSVNLHPLWVIFSMTVGGMLCGLAGILLAVPVAATVAGFVRLGISYYKDSSYYR
DEATNTD

Sequences:

>Translated_327_residues
MLFAFAFSFILAYFLNRSTTKLAALIGSRGIASLLVVAFLSILVILVFSLAIPLLYHQLILFLKGAPQLIAYIENSIKIS
SPGLHSFLEERGMSSLFEYILSLVPQLSTKITQHLWNSTLVLANIVILLIFTPVILFYLLQDWPKMTNAIKEIIPLKHRT
AFSNQVTLMDASISGYVLGQMKISFILGVLYTVLLFFAGMPYYFLIGVSTGMLTIIPYFGNITGLITSHLVALSRASSIL
DVLPITLIFIFCGAIEGLFLSPKLLSKSVNLHPLWVIFSMTVGGMLCGLAGILLAVPVAATVAGFVRLGISYYKDSSYYR
DEATNTD
>Mature_327_residues
MLFAFAFSFILAYFLNRSTTKLAALIGSRGIASLLVVAFLSILVILVFSLAIPLLYHQLILFLKGAPQLIAYIENSIKIS
SPGLHSFLEERGMSSLFEYILSLVPQLSTKITQHLWNSTLVLANIVILLIFTPVILFYLLQDWPKMTNAIKEIIPLKHRT
AFSNQVTLMDASISGYVLGQMKISFILGVLYTVLLFFAGMPYYFLIGVSTGMLTIIPYFGNITGLITSHLVALSRASSIL
DVLPITLIFIFCGAIEGLFLSPKLLSKSVNLHPLWVIFSMTVGGMLCGLAGILLAVPVAATVAGFVRLGISYYKDSSYYR
DEATNTD

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1788838, Length=301, Percent_Identity=25.5813953488372, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 35970; Mature: 35970

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFAFAFSFILAYFLNRSTTKLAALIGSRGIASLLVVAFLSILVILVFSLAIPLLYHQLI
CHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFLKGAPQLIAYIENSIKISSPGLHSFLEERGMSSLFEYILSLVPQLSTKITQHLWNSTL
HHHCCCHHHHHHHHHCCEECCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLANIVILLIFTPVILFYLLQDWPKMTNAIKEIIPLKHRTAFSNQVTLMDASISGYVLGQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCEEEEECCCCCHHHHH
MKISFILGVLYTVLLFFAGMPYYFLIGVSTGMLTIIPYFGNITGLITSHLVALSRASSIL
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVLPITLIFIFCGAIEGLFLSPKLLSKSVNLHPLWVIFSMTVGGMLCGLAGILLAVPVAA
HHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVAGFVRLGISYYKDSSYYRDEATNTD
HHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MLFAFAFSFILAYFLNRSTTKLAALIGSRGIASLLVVAFLSILVILVFSLAIPLLYHQLI
CHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LFLKGAPQLIAYIENSIKISSPGLHSFLEERGMSSLFEYILSLVPQLSTKITQHLWNSTL
HHHCCCHHHHHHHHHCCEECCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VLANIVILLIFTPVILFYLLQDWPKMTNAIKEIIPLKHRTAFSNQVTLMDASISGYVLGQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCCCEEEEECCCCCHHHHH
MKISFILGVLYTVLLFFAGMPYYFLIGVSTGMLTIIPYFGNITGLITSHLVALSRASSIL
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DVLPITLIFIFCGAIEGLFLSPKLLSKSVNLHPLWVIFSMTVGGMLCGLAGILLAVPVAA
HHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVAGFVRLGISYYKDSSYYRDEATNTD
HHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]