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The map label for this gene is vacJ [C]

Identifier: 88607983

GI number: 88607983

Start: 826472

End: 827101

Strand: Direct

Name: vacJ [C]

Synonym: NSE_0936

Alternate gene names: 88607983

Gene position: 826472-827101 (Clockwise)

Preceding gene: 88608041

Following gene: 88607967

Centisome position: 96.21

GC content: 37.62

Gene sequence:

>630_bases
GTGGTAACAAAAGTCTATGATCCCATGGAGAAACTTAATAGGAGGATATTCAAAATGAATAGCCTACTTTTCAAGTACCT
AAAATCTTCCGCTAATAAAAAACTTTTCCGAGGAACAAATCCTGGAAAATCTCGTGCAGGTCGTAAAGGTATGGACTCCG
CAAAGTATTTACTTCTTAACATTGCAGATAATCTTTCCGAACCGAGCTATGTGATTAACCATTTTCTACAGGGTAACCCA
AAAAATGCTGTGGTAGAATTTTGGCGGTTTTTTATCAATTCCACACTTGGTATATTCGGAACCTTCGACATAGCACAGAC
TCTGGGTCTAGAGAAGAAGACAACTTCCTATAGAAAGACACTCATCATGTATGGGATAAAAAATGGACCATTCATAATGT
TCCCACTGTTTGGTGCGACATCACTAAGGAACAGTGTTGCTGCCCTGCTTGAAATTCTTACGAATCCATTGAATCTCGTG
ATACAACATAAATTTGTACCATTCACGGTATACAATTGCTCCCAAATTGCTAGAGAAATTGATTACTACGACATAGTTTT
TGAAAACAGCATTGACCCTTATATAAAACTGCGCACCTTTTTGGTAAATTACGATGCGGCATTCAAATAA

Upstream 100 bases:

>100_bases
TATTCTTTTTGCACTAGCGTCCCTAACTCTCACACCGCGCCTGGGCAAGACAACTGAAGAACTCGATATATTATTCTACT
ACCCAAAAACAACAAGCACC

Downstream 100 bases:

>100_bases
AGAAAAATGGCTAATTTGGCTACTGTTTATAACGCTTTTTTTTCCTTCGAGGATCTTTGCACAAGGCTCCACAGGTGAGT
TTATCTCATCCCTATATACA

Product: putative vacJ lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MVTKVYDPMEKLNRRIFKMNSLLFKYLKSSANKKLFRGTNPGKSRAGRKGMDSAKYLLLNIADNLSEPSYVINHFLQGNP
KNAVVEFWRFFINSTLGIFGTFDIAQTLGLEKKTTSYRKTLIMYGIKNGPFIMFPLFGATSLRNSVAALLEILTNPLNLV
IQHKFVPFTVYNCSQIAREIDYYDIVFENSIDPYIKLRTFLVNYDAAFK

Sequences:

>Translated_209_residues
MVTKVYDPMEKLNRRIFKMNSLLFKYLKSSANKKLFRGTNPGKSRAGRKGMDSAKYLLLNIADNLSEPSYVINHFLQGNP
KNAVVEFWRFFINSTLGIFGTFDIAQTLGLEKKTTSYRKTLIMYGIKNGPFIMFPLFGATSLRNSVAALLEILTNPLNLV
IQHKFVPFTVYNCSQIAREIDYYDIVFENSIDPYIKLRTFLVNYDAAFK
>Mature_209_residues
MVTKVYDPMEKLNRRIFKMNSLLFKYLKSSANKKLFRGTNPGKSRAGRKGMDSAKYLLLNIADNLSEPSYVINHFLQGNP
KNAVVEFWRFFINSTLGIFGTFDIAQTLGLEKKTTSYRKTLIMYGIKNGPFIMFPLFGATSLRNSVAALLEILTNPLNLV
IQHKFVPFTVYNCSQIAREIDYYDIVFENSIDPYIKLRTFLVNYDAAFK

Specific function: Unknown

COG id: COG2853

COG function: function code M; Surface lipoprotein

Gene ontology:

Cell location: Attached To The Outer Membrane By A Lipid Anchor [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaA family [H]

Homologues:

Organism=Escherichia coli, GI1788688, Length=203, Percent_Identity=30.0492610837438, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007428 [H]

Pfam domain/function: PF04333 VacJ [H]

EC number: NA

Molecular weight: Translated: 24015; Mature: 24015

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTKVYDPMEKLNRRIFKMNSLLFKYLKSSANKKLFRGTNPGKSRAGRKGMDSAKYLLLN
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHCCCCCCCCHHEEEEE
IADNLSEPSYVINHFLQGNPKNAVVEFWRFFINSTLGIFGTFDIAQTLGLEKKTTSYRKT
HHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHH
LIMYGIKNGPFIMFPLFGATSLRNSVAALLEILTNPLNLVIQHKFVPFTVYNCSQIAREI
HEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCEEEECHHHHHHHC
DYYDIVFENSIDPYIKLRTFLVNYDAAFK
CHHEEEECCCCCHHHHHHHHHEECCCCCC
>Mature Secondary Structure
MVTKVYDPMEKLNRRIFKMNSLLFKYLKSSANKKLFRGTNPGKSRAGRKGMDSAKYLLLN
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHCCCCCCCCHHEEEEE
IADNLSEPSYVINHFLQGNPKNAVVEFWRFFINSTLGIFGTFDIAQTLGLEKKTTSYRKT
HHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHH
LIMYGIKNGPFIMFPLFGATSLRNSVAALLEILTNPLNLVIQHKFVPFTVYNCSQIAREI
HEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHCHHHHHHCCCCCCEEEECHHHHHHHC
DYYDIVFENSIDPYIKLRTFLVNYDAAFK
CHHEEEECCCCCHHHHHHHHHEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA