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The map label for this gene is rlmE [H]

Identifier: 88607828

GI number: 88607828

Start: 880818

End: 880994

Strand: Reverse

Name: rlmE [H]

Synonym: APH_0830

Alternate gene names: 88607828

Gene position: 880994-880818 (Counterclockwise)

Preceding gene: 88607250

Following gene: 88606910

Centisome position: 59.88

GC content: 38.98

Gene sequence:

>177_bases
TTGGAATACCCAAGTCCTAGTAGCAGTCTTGTTGCAAAATTACTGCACAGAGAGTACGAGCAAGAGTTTAAGCGATCTAT
CATGATGTGTTTTGATATATTTTTACGCTTCAACCCTAAGTCCAGCAGGAAAGATACTTCTGAGATCTATTTAGCAGCTC
TAAAGTTCAAAGGGTAG

Upstream 100 bases:

>100_bases
GGAATAAAGTTCGACCTGGAACTATCAGAAACCCTGTGGGTACAGGTAGGTTGACCATGTAAACATAATAAACTCATGTG
AACTTGCGAAAGATATAGCT

Downstream 100 bases:

>100_bases
TGGATACTCGTGGAGTTTAAGCTTCTCTAGAATTACTGCTCAGCGTTCTATTCTGCAAATCCAATACTCAATAAATATGT
GCAGGATGCACCTTTCAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: 23S rRNA Um2552 methyltransferase; rRNA (uridine-2'-O-)-methyltransferase [H]

Number of amino acids: Translated: 58; Mature: 58

Protein sequence:

>58_residues
MEYPSPSSSLVAKLLHREYEQEFKRSIMMCFDIFLRFNPKSSRKDTSEIYLAALKFKG

Sequences:

>Translated_58_residues
MEYPSPSSSLVAKLLHREYEQEFKRSIMMCFDIFLRFNPKSSRKDTSEIYLAALKFKG
>Mature_58_residues
MEYPSPSSSLVAKLLHREYEQEFKRSIMMCFDIFLRFNPKSSRKDTSEIYLAALKFKG

Specific function: Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RlmE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015507
- InterPro:   IPR002877 [H]

Pfam domain/function: PF01728 FtsJ [H]

EC number: =2.1.1.166 [H]

Molecular weight: Translated: 6866; Mature: 6866

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYPSPSSSLVAKLLHREYEQEFKRSIMMCFDIFLRFNPKSSRKDTSEIYLAALKFKG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MEYPSPSSSLVAKLLHREYEQEFKRSIMMCFDIFLRFNPKSSRKDTSEIYLAALKFKG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA