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The map label for this gene is 88607746

Identifier: 88607746

GI number: 88607746

Start: 584245

End: 584973

Strand: Direct

Name: 88607746

Synonym: APH_0554

Alternate gene names: NA

Gene position: 584245-584973 (Clockwise)

Preceding gene: 88606819

Following gene: 88606973

Centisome position: 39.71

GC content: 43.48

Gene sequence:

>729_bases
ATGAGTAGTGGTGTTGGGCGTATATTTCGCTATACACTATTTCTCTATTATGGTATCTCATTGACTGACCTGCGTTCTCG
TGGATTTTGTATGGATACTGGTAAGGACAGGAGGGCTGTCTCTGACATACTGGAAGAGGTCAGTGTGCAGGGGAGTGCAG
ACACAGTTACTCTGTACGAACTTAAAATGATACTTCGTGACCGAGGTTTTGGCGTGTTGATGCTGCTGTTTTCCTTACCT
CTGTCGATACCGATTCCTGTTGTGCCCGGATATACGACAATTTTGTCGTTGCCGCTGCTGCTGTTCTCCATGCAGATGTT
GATGGGTATGTCTATACCATGGTTGCCGGCGTTTTTGGAAAGAAAATCCTTTAAGCGTAGCTTTCTTGCAGCTGTTATAG
AGAAGACATCGCCTTTTCTTAGAAAAACAGAGAAGTGGACAAAGCCTAGGATGCTATTCATATTCTGCAATGTTGGGGAG
AGGACAATAGCTATGCTGTGTCTGTTATGCGCAATATCAATTGCTATACCACTTCCCTTGACAAACTTTATTCCTGCTGG
AGGGATATCAGCCATGGCGCTTGGTGTACTGAATAAGGATGGAGTTTTGGTTATAGTGGGTGTATTGCTCGCGTTTTTGG
GAATTTCTGTCACATCTGTTGTCTTGATTGCTGGTCCGAAGCTCGTAATGGGGATGTTCTCTTTTATCTACAAATTTTTT
GTAATATGA

Upstream 100 bases:

>100_bases
AAATAGCATAGGAGAATCCTCATAATGGGTCTACCGTGCGTCATGGCATATGTACTCAGAGTTGTTGTATTCGTCATGCA
AAATAGGTTACCAATACGGG

Downstream 100 bases:

>100_bases
AGCTGTACGATACTTTTAGTGCTGCCAAGAGGGTATTTGACCCTATAGATAGCGCATGCGTGAAAATTTATGCATGTGGT
CCTACGGTTTATGATCTGGC

Product: putative exopolysaccharide synthesis protein ExoD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MSSGVGRIFRYTLFLYYGISLTDLRSRGFCMDTGKDRRAVSDILEEVSVQGSADTVTLYELKMILRDRGFGVLMLLFSLP
LSIPIPVVPGYTTILSLPLLLFSMQMLMGMSIPWLPAFLERKSFKRSFLAAVIEKTSPFLRKTEKWTKPRMLFIFCNVGE
RTIAMLCLLCAISIAIPLPLTNFIPAGGISAMALGVLNKDGVLVIVGVLLAFLGISVTSVVLIAGPKLVMGMFSFIYKFF
VI

Sequences:

>Translated_242_residues
MSSGVGRIFRYTLFLYYGISLTDLRSRGFCMDTGKDRRAVSDILEEVSVQGSADTVTLYELKMILRDRGFGVLMLLFSLP
LSIPIPVVPGYTTILSLPLLLFSMQMLMGMSIPWLPAFLERKSFKRSFLAAVIEKTSPFLRKTEKWTKPRMLFIFCNVGE
RTIAMLCLLCAISIAIPLPLTNFIPAGGISAMALGVLNKDGVLVIVGVLLAFLGISVTSVVLIAGPKLVMGMFSFIYKFF
VI
>Mature_241_residues
SSGVGRIFRYTLFLYYGISLTDLRSRGFCMDTGKDRRAVSDILEEVSVQGSADTVTLYELKMILRDRGFGVLMLLFSLPL
SIPIPVVPGYTTILSLPLLLFSMQMLMGMSIPWLPAFLERKSFKRSFLAAVIEKTSPFLRKTEKWTKPRMLFIFCNVGER
TIAMLCLLCAISIAIPLPLTNFIPAGGISAMALGVLNKDGVLVIVGVLLAFLGISVTSVVLIAGPKLVMGMFSFIYKFFV
I

Specific function: Unknown

COG id: COG3932

COG function: function code R; Uncharacterized ABC-type transport system, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To R.meliloti exoD [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010331 [H]

Pfam domain/function: PF06055 ExoD [H]

EC number: NA

Molecular weight: Translated: 26758; Mature: 26627

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
7.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSGVGRIFRYTLFLYYGISLTDLRSRGFCMDTGKDRRAVSDILEEVSVQGSADTVTLYE
CCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHH
LKMILRDRGFGVLMLLFSLPLSIPIPVVPGYTTILSLPLLLFSMQMLMGMSIPWLPAFLE
HHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
RKSFKRSFLAAVIEKTSPFLRKTEKWTKPRMLFIFCNVGERTIAMLCLLCAISIAIPLPL
HHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCH
TNFIPAGGISAMALGVLNKDGVLVIVGVLLAFLGISVTSVVLIAGPKLVMGMFSFIYKFF
HHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
VI
CC
>Mature Secondary Structure 
SSGVGRIFRYTLFLYYGISLTDLRSRGFCMDTGKDRRAVSDILEEVSVQGSADTVTLYE
CCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHH
LKMILRDRGFGVLMLLFSLPLSIPIPVVPGYTTILSLPLLLFSMQMLMGMSIPWLPAFLE
HHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
RKSFKRSFLAAVIEKTSPFLRKTEKWTKPRMLFIFCNVGERTIAMLCLLCAISIAIPLPL
HHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCH
TNFIPAGGISAMALGVLNKDGVLVIVGVLLAFLGISVTSVVLIAGPKLVMGMFSFIYKFF
HHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
VI
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]