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The map label for this gene is recF [H]

Identifier: 88607598

GI number: 88607598

Start: 1468308

End: 1469423

Strand: Reverse

Name: recF [H]

Synonym: APH_1409

Alternate gene names: 88607598

Gene position: 1469423-1468308 (Counterclockwise)

Preceding gene: 88606863

Following gene: 88607595

Centisome position: 99.87

GC content: 38.98

Gene sequence:

>1116_bases
ATGTCTTGCAAATTTCAGTCATACGTACAAGTTGTAAAACTTGTGAATTTCCGTAACTATTCCAAAGTAGAATTAGAAAG
CAATGGAAAGTCAGTTGTACTGTTGGGAGAAAACGGTGTAGGAAAGACCAACATCCTAGAAGCAGTATCACTGTTATCAA
AAGGCCCTGGATTGCGCAATGTTAGTGCTGATTGCATGCAGAACAGCGGGACAACAATACCGTGGTTAGTGCATTACAAC
ATAGTTGGCAATGGAGAGTTTTTCTCCGTAGACATAACTAAAAAAAACAATAAGCGTTCTGTTACTATAGATGAAAAGGC
TAGTCTCTACAGTACATTACATAAGATCCTATGCATACTGTGGCTAGTGCCTCAATTGGACCATATTTTGTTGAAGGCAC
CTACTGAGCGTCTGAGGTTTTTTGACAGAATGGTTCACATATTTGACAAGGACTATTCACTTCATATGGTCAAATATGAG
AAGGCGAAACGTGACCGAAAGAAAATCTTACAGGAATCACCACATAATCACCATTGGCTTAGCAGTCTGGAGGAGATCAT
GAGCGCCAGTGGTGTACATATCGCCAAAATCAGACAGCATGTATTAGAAACATTGCATGCCACCTTGGCAGAACATTCTT
CAAGGTCCACATTTTTCAAGTTCATTATACGCTTAGAGAGTAAAGTTTTTGAACTACTAGATAACCCTGATAAAGCAGTC
GATGCATATGCAGAACGCTTGAGAAGTAATCGTAATATAGACGCTGCAAGACAATGTACTACCTTTGGTGTGCATAATGA
CAATTTTCAGGTTTTTAATGAAAAAAAAGACCTTGTTGCAAGTAGTTGCTCAACTGGTGAGCAAAAGATCTTACTGTTAT
CACTTTTGCTAACAGCTGCAACAGCAAAACATAAAATTGATGGCCAAGCACCGATAATGCTTCTAGACGATATAATGTCA
CACCTAGATCCACAGCATCGAAAGGAACTGATGTCTATTATTGAACACTTAGGTTGCCAAGTATGGATAACAGACGTGGA
CGAGAAAAATTTCGAGGGATTCCGGGAAAATTTTCAATACTTTCACGTTGCTAACAACAACGTTTGTAAAATGTAG

Upstream 100 bases:

>100_bases
CGGGTACAATCTGTGTTTATATTCTCGTCATAACAAAAAAATTCACTATATTACACTTAGGTGGGGTATAACACCCTGTA
GGTGAGGTAGATTTCTCTGT

Downstream 100 bases:

>100_bases
AAATGCTGTTAATGGGTGTTTCTTCCAGCTCCTGCTATAGCTCAAGGTGCGGATTCTATGCAAAAAAGCAGTGTCCGTAG
TACTATGATGCTTTCTTTAT

Product: recombination protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 370

Protein sequence:

>371_residues
MSCKFQSYVQVVKLVNFRNYSKVELESNGKSVVLLGENGVGKTNILEAVSLLSKGPGLRNVSADCMQNSGTTIPWLVHYN
IVGNGEFFSVDITKKNNKRSVTIDEKASLYSTLHKILCILWLVPQLDHILLKAPTERLRFFDRMVHIFDKDYSLHMVKYE
KAKRDRKKILQESPHNHHWLSSLEEIMSASGVHIAKIRQHVLETLHATLAEHSSRSTFFKFIIRLESKVFELLDNPDKAV
DAYAERLRSNRNIDAARQCTTFGVHNDNFQVFNEKKDLVASSCSTGEQKILLLSLLLTAATAKHKIDGQAPIMLLDDIMS
HLDPQHRKELMSIIEHLGCQVWITDVDEKNFEGFRENFQYFHVANNNVCKM

Sequences:

>Translated_371_residues
MSCKFQSYVQVVKLVNFRNYSKVELESNGKSVVLLGENGVGKTNILEAVSLLSKGPGLRNVSADCMQNSGTTIPWLVHYN
IVGNGEFFSVDITKKNNKRSVTIDEKASLYSTLHKILCILWLVPQLDHILLKAPTERLRFFDRMVHIFDKDYSLHMVKYE
KAKRDRKKILQESPHNHHWLSSLEEIMSASGVHIAKIRQHVLETLHATLAEHSSRSTFFKFIIRLESKVFELLDNPDKAV
DAYAERLRSNRNIDAARQCTTFGVHNDNFQVFNEKKDLVASSCSTGEQKILLLSLLLTAATAKHKIDGQAPIMLLDDIMS
HLDPQHRKELMSIIEHLGCQVWITDVDEKNFEGFRENFQYFHVANNNVCKM
>Mature_370_residues
SCKFQSYVQVVKLVNFRNYSKVELESNGKSVVLLGENGVGKTNILEAVSLLSKGPGLRNVSADCMQNSGTTIPWLVHYNI
VGNGEFFSVDITKKNNKRSVTIDEKASLYSTLHKILCILWLVPQLDHILLKAPTERLRFFDRMVHIFDKDYSLHMVKYEK
AKRDRKKILQESPHNHHWLSSLEEIMSASGVHIAKIRQHVLETLHATLAEHSSRSTFFKFIIRLESKVFELLDNPDKAVD
AYAERLRSNRNIDAARQCTTFGVHNDNFQVFNEKKDLVASSCSTGEQKILLLSLLLTAATAKHKIDGQAPIMLLDDIMSH
LDPQHRKELMSIIEHLGCQVWITDVDEKNFEGFRENFQYFHVANNNVCKM

Specific function: The recF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP [H]

COG id: COG1195

COG function: function code L; Recombinational DNA repair ATPase (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR001238
- InterPro:   IPR018078
- InterPro:   IPR003395
- InterPro:   IPR007406 [H]

Pfam domain/function: PF02463 SMC_N [H]

EC number: NA

Molecular weight: Translated: 42453; Mature: 42322

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS00618 RECF_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSCKFQSYVQVVKLVNFRNYSKVELESNGKSVVLLGENGVGKTNILEAVSLLSKGPGLRN
CCCCHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC
VSADCMQNSGTTIPWLVHYNIVGNGEFFSVDITKKNNKRSVTIDEKASLYSTLHKILCIL
CCHHHHHCCCCCEEEEEEEEEEECCEEEEEEEEECCCCEEEEECHHHHHHHHHHHHHHHH
WLVPQLDHILLKAPTERLRFFDRMVHIFDKDYSLHMVKYEKAKRDRKKILQESPHNHHWL
HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCHHH
SSLEEIMSASGVHIAKIRQHVLETLHATLAEHSSRSTFFKFIIRLESKVFELLDNPDKAV
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHH
DAYAERLRSNRNIDAARQCTTFGVHNDNFQVFNEKKDLVASSCSTGEQKILLLSLLLTAA
HHHHHHHHCCCCCCHHHHHHEECEECCCCEEECCHHHHHHHCCCCCHHHHHHHHHHHHHH
TAKHKIDGQAPIMLLDDIMSHLDPQHRKELMSIIEHLGCQVWITDVDEKNFEGFRENFQY
HHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHCCCEE
FHVANNNVCKM
EEEECCCCCCC
>Mature Secondary Structure 
SCKFQSYVQVVKLVNFRNYSKVELESNGKSVVLLGENGVGKTNILEAVSLLSKGPGLRN
CCCHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC
VSADCMQNSGTTIPWLVHYNIVGNGEFFSVDITKKNNKRSVTIDEKASLYSTLHKILCIL
CCHHHHHCCCCCEEEEEEEEEEECCEEEEEEEEECCCCEEEEECHHHHHHHHHHHHHHHH
WLVPQLDHILLKAPTERLRFFDRMVHIFDKDYSLHMVKYEKAKRDRKKILQESPHNHHWL
HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCCCHHH
SSLEEIMSASGVHIAKIRQHVLETLHATLAEHSSRSTFFKFIIRLESKVFELLDNPDKAV
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHH
DAYAERLRSNRNIDAARQCTTFGVHNDNFQVFNEKKDLVASSCSTGEQKILLLSLLLTAA
HHHHHHHHCCCCCCHHHHHHEECEECCCCEEECCHHHHHHHCCCCCHHHHHHHHHHHHHH
TAKHKIDGQAPIMLLDDIMSHLDPQHRKELMSIIEHLGCQVWITDVDEKNFEGFRENFQY
HHHHCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHCCCEE
FHVANNNVCKM
EEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA