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The map label for this gene is ycfF [C]

Identifier: 88607402

GI number: 88607402

Start: 913551

End: 913925

Strand: Direct

Name: ycfF [C]

Synonym: APH_0860

Alternate gene names: 88607402

Gene position: 913551-913925 (Clockwise)

Preceding gene: 88606850

Following gene: 88606937

Centisome position: 62.09

GC content: 40.27

Gene sequence:

>375_bases
ATGGAACCATCACTATACGATAACGACAACGTATTCGCAAAAATCCTTAGAGGGGAGTTGCCGTGCACAAAAGTCTACGA
AGATGATAATGTCCTGGCATTTCACGATATAAAACCAGAAGCCCCTGTACATGTTTTGGTGATCCCTAAAGGAAAATTTG
TGTCATTTGACGACTTTGTCGAATCTGGGTATGACGTGTCTGAATTTTTTAAGACTGTAGGAAAAATTGCACGCCAGTTT
AACTTACATACTGGCGGCTACAGGCTAGTAACAAATCATGGGAAATCTGCTGGACAAATAGTGCATCATTTTCATGTTCA
TATATTAGGCTATCCACAGCGTGAACACGATTGCACTAATAATAGCGGTGAATGA

Upstream 100 bases:

>100_bases
CATGATGATTCAGCACAAACACAAGGGAATCCTACTGTCACTCCTTTAGTAAGCGCACAGAATAGAGGCCCAGAAACACA
TGGTAAAGGTACGAGGTAAA

Downstream 100 bases:

>100_bases
CCGACTCTTTGCACCACAGTGGACCTACATTTGCAAGCCTAATGAGCTGGCTATAATGAGACTATGGGTTGTATTACGTT
TTGCCGCTATGATGGTTTTT

Product: HIT family protein

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 124; Mature: 124

Protein sequence:

>124_residues
MEPSLYDNDNVFAKILRGELPCTKVYEDDNVLAFHDIKPEAPVHVLVIPKGKFVSFDDFVESGYDVSEFFKTVGKIARQF
NLHTGGYRLVTNHGKSAGQIVHHFHVHILGYPQREHDCTNNSGE

Sequences:

>Translated_124_residues
MEPSLYDNDNVFAKILRGELPCTKVYEDDNVLAFHDIKPEAPVHVLVIPKGKFVSFDDFVESGYDVSEFFKTVGKIARQF
NLHTGGYRLVTNHGKSAGQIVHHFHVHILGYPQREHDCTNNSGE
>Mature_124_residues
MEPSLYDNDNVFAKILRGELPCTKVYEDDNVLAFHDIKPEAPVHVLVIPKGKFVSFDDFVESGYDVSEFFKTVGKIARQF
NLHTGGYRLVTNHGKSAGQIVHHFHVHILGYPQREHDCTNNSGE

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain [H]

Homologues:

Organism=Homo sapiens, GI4885413, Length=107, Percent_Identity=42.0560747663551, Blast_Score=84, Evalue=2e-17,
Organism=Homo sapiens, GI14211923, Length=101, Percent_Identity=38.6138613861386, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1787346, Length=103, Percent_Identity=39.8058252427184, Blast_Score=76, Evalue=7e-16,
Organism=Caenorhabditis elegans, GI17506713, Length=109, Percent_Identity=42.2018348623853, Blast_Score=99, Evalue=4e-22,
Organism=Drosophila melanogaster, GI24581222, Length=109, Percent_Identity=41.2844036697248, Blast_Score=90, Evalue=3e-19,
Organism=Drosophila melanogaster, GI28574010, Length=115, Percent_Identity=39.1304347826087, Blast_Score=90, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310 [H]

Pfam domain/function: PF01230 HIT [H]

EC number: NA

Molecular weight: Translated: 14042; Mature: 14042

Theoretical pI: Translated: 6.41; Mature: 6.41

Prosite motif: PS00892 HIT_1 ; PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEPSLYDNDNVFAKILRGELPCTKVYEDDNVLAFHDIKPEAPVHVLVIPKGKFVSFDDFV
CCCCCCCCCHHHHHHHHCCCCCCEEECCCCEEEEECCCCCCCEEEEEECCCCEECHHHHH
ESGYDVSEFFKTVGKIARQFNLHTGGYRLVTNHGKSAGQIVHHFHVHILGYPQREHDCTN
HCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHEEEEEEEEEEECCCCCCCCCC
NSGE
CCCC
>Mature Secondary Structure
MEPSLYDNDNVFAKILRGELPCTKVYEDDNVLAFHDIKPEAPVHVLVIPKGKFVSFDDFV
CCCCCCCCCHHHHHHHHCCCCCCEEECCCCEEEEECCCCCCCEEEEEECCCCEECHHHHH
ESGYDVSEFFKTVGKIARQFNLHTGGYRLVTNHGKSAGQIVHHFHVHILGYPQREHDCTN
HCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHEEEEEEEEEEECCCCCCCCCC
NSGE
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2664449; 1472710 [H]