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The map label for this gene is yfjD [C]

Identifier: 88607016

GI number: 88607016

Start: 1019633

End: 1020901

Strand: Direct

Name: yfjD [C]

Synonym: APH_0957

Alternate gene names: 88607016

Gene position: 1019633-1020901 (Clockwise)

Preceding gene: 88606970

Following gene: 88607416

Centisome position: 69.3

GC content: 42.71

Gene sequence:

>1269_bases
GTGTTGATTATTGTCGCTTTGTCATTGCTCGCTTCCGCTTTCTTTTCTGCAGCGGAAACAGCTTTTACTTCTGTGAGCCC
TTCGTCCATTCACAAGTTAGTGGTAAGTGGTAATAGGAGAGCTAAAGTTGTGGATGCTCTTACTGCTAGGAAGGAACTCG
TAATCAGCACACTGCTAATTGGAAATACCGTTGCCAACGTAGCTGCGTCTTCTGTTGCTACAGCTTGGTTAGTGGGGTTA
CTGGGCTCTGAGGGATTGGTGGTTTCTACTGTCACTGTCACGTGCCTGATTCTGTTATTTTCAGAGGTACTCCCCAAGAC
GTATGCTCTTCAAAATCCGGAAAAGATCTCGCTGCGTACCTCAGTCATTGTGCACGCATGCTTTTTACTGCTCTCTCCTA
TAGCAGTTTCTATCAGGTACATTGTAGACTTTGTAGTAAAAATACTCGGAATGCGGGGAGAAAGAGAAATGATTTCCGCT
GTAGATGCAATGAGAAACCTCATATTGTTGCATGAAAGTAAGGGAACAATGTTTCAACAAGATCTAGACATGCTGAGCAG
TGTCCTAGACTTAGCAGAGACTGAAATATCTCAGGTAATGACGCATAGGAAAAATTTGTTTGCTCTCAATATAGACGAAG
AAGTAGGCGTCTTGATAAAGCAAATTCTTCAGAGCAGCCATAGTAGGATTCCGATCTGGAAGGAGCGTGAAGAATCAATA
ATCGGAGTCATCCACGTAAGGGATGTTACTGATCTTGTACGAGAGAAGAGTAATAACGTAACTAAGAGCGACATATATAG
CATAATAAACAAGCCTTGGTTCGTGCCTGATACTACGCCTCTTAGTGTGCAATTACACAATTTTCGCTACAAGCGTAGGC
ATCTTGCTCTAGTAGTAGATGAATATGGAACCTTGCAAGGTGCTGTGACACTGGAAGATATTCTTGAAGAAATAGTCGGT
GATATCTCTGATGAGCACGACGTAGTTCCAGAAAGCTTAATTACCTCTATTAGCGAAAATGAGTTCCATATTGGTGGTGG
TGCCCCTATTAGAGACGTAAATAGACAACTTCGCTGGAATTTACCTGAAGAAGCTTCAACTTTAGCTGGGTTAATTCTGC
ATGACGTGGAGCGTATACCTGAAGAGGGCGAGATGTTCCATCTACATGGGTTTTTGTTTAAAATCCTGAAAAAAAACGGA
AACACAATTTCCTTACTAAGCGTTACTACTTCTCACAAAAGCTCCGACGCTCAACAGCCACAGGGCTGA

Upstream 100 bases:

>100_bases
TGCCTTTTTTGTTTGTGTGCTTGGGAAATTAACTAATATTTCAACTTGAAGATATTGCGATTATCGTATAGAATGCTCCT
AGGATCGATGCCGTTTTCTA

Downstream 100 bases:

>100_bases
AATATACTCACAGAGGCCGAAATCAGCTCTACTAACTCTCAGCGTATTACCTTTGCGTCCTAATCTATGATAGAATGCAG
TCATATACGGTATATCTTCT

Product: CBS/transporter associated domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MLIIVALSLLASAFFSAAETAFTSVSPSSIHKLVVSGNRRAKVVDALTARKELVISTLLIGNTVANVAASSVATAWLVGL
LGSEGLVVSTVTVTCLILLFSEVLPKTYALQNPEKISLRTSVIVHACFLLLSPIAVSIRYIVDFVVKILGMRGEREMISA
VDAMRNLILLHESKGTMFQQDLDMLSSVLDLAETEISQVMTHRKNLFALNIDEEVGVLIKQILQSSHSRIPIWKEREESI
IGVIHVRDVTDLVREKSNNVTKSDIYSIINKPWFVPDTTPLSVQLHNFRYKRRHLALVVDEYGTLQGAVTLEDILEEIVG
DISDEHDVVPESLITSISENEFHIGGGAPIRDVNRQLRWNLPEEASTLAGLILHDVERIPEEGEMFHLHGFLFKILKKNG
NTISLLSVTTSHKSSDAQQPQG

Sequences:

>Translated_422_residues
MLIIVALSLLASAFFSAAETAFTSVSPSSIHKLVVSGNRRAKVVDALTARKELVISTLLIGNTVANVAASSVATAWLVGL
LGSEGLVVSTVTVTCLILLFSEVLPKTYALQNPEKISLRTSVIVHACFLLLSPIAVSIRYIVDFVVKILGMRGEREMISA
VDAMRNLILLHESKGTMFQQDLDMLSSVLDLAETEISQVMTHRKNLFALNIDEEVGVLIKQILQSSHSRIPIWKEREESI
IGVIHVRDVTDLVREKSNNVTKSDIYSIINKPWFVPDTTPLSVQLHNFRYKRRHLALVVDEYGTLQGAVTLEDILEEIVG
DISDEHDVVPESLITSISENEFHIGGGAPIRDVNRQLRWNLPEEASTLAGLILHDVERIPEEGEMFHLHGFLFKILKKNG
NTISLLSVTTSHKSSDAQQPQG
>Mature_422_residues
MLIIVALSLLASAFFSAAETAFTSVSPSSIHKLVVSGNRRAKVVDALTARKELVISTLLIGNTVANVAASSVATAWLVGL
LGSEGLVVSTVTVTCLILLFSEVLPKTYALQNPEKISLRTSVIVHACFLLLSPIAVSIRYIVDFVVKILGMRGEREMISA
VDAMRNLILLHESKGTMFQQDLDMLSSVLDLAETEISQVMTHRKNLFALNIDEEVGVLIKQILQSSHSRIPIWKEREESI
IGVIHVRDVTDLVREKSNNVTKSDIYSIINKPWFVPDTTPLSVQLHNFRYKRRHLALVVDEYGTLQGAVTLEDILEEIVG
DISDEHDVVPESLITSISENEFHIGGGAPIRDVNRQLRWNLPEEASTLAGLILHDVERIPEEGEMFHLHGFLFKILKKNG
NTISLLSVTTSHKSSDAQQPQG

Specific function: Unknown

COG id: COG4536

COG function: function code P; Putative Mg2+ and Co2+ transporter CorB

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=392, Percent_Identity=25.765306122449, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI94681046, Length=336, Percent_Identity=23.2142857142857, Blast_Score=96, Evalue=9e-20,
Organism=Homo sapiens, GI40068055, Length=347, Percent_Identity=23.0547550432277, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI40068053, Length=347, Percent_Identity=23.0547550432277, Blast_Score=81, Evalue=2e-15,
Organism=Escherichia coli, GI145693175, Length=397, Percent_Identity=31.4861460957179, Blast_Score=221, Evalue=1e-58,
Organism=Escherichia coli, GI1790664, Length=436, Percent_Identity=23.6238532110092, Blast_Score=121, Evalue=9e-29,
Organism=Escherichia coli, GI1786879, Length=240, Percent_Identity=28.3333333333333, Blast_Score=105, Evalue=7e-24,
Organism=Escherichia coli, GI87082033, Length=407, Percent_Identity=24.8157248157248, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI1788119, Length=281, Percent_Identity=23.8434163701068, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71980512, Length=362, Percent_Identity=25.6906077348066, Blast_Score=78, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17539402, Length=349, Percent_Identity=24.9283667621776, Blast_Score=75, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17550766, Length=315, Percent_Identity=25.3968253968254, Blast_Score=65, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6324512, Length=296, Percent_Identity=27.3648648648649, Blast_Score=94, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 46595; Mature: 46595

Theoretical pI: Translated: 6.02; Mature: 6.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIIVALSLLASAFFSAAETAFTSVSPSSIHKLVVSGNRRAKVVDALTARKELVISTLLI
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
GNTVANVAASSVATAWLVGLLGSEGLVVSTVTVTCLILLFSEVLPKTYALQNPEKISLRT
HHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHH
SVIVHACFLLLSPIAVSIRYIVDFVVKILGMRGEREMISAVDAMRNLILLHESKGTMFQQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEECCCCCHHHH
DLDMLSSVLDLAETEISQVMTHRKNLFALNIDEEVGVLIKQILQSSHSRIPIWKEREESI
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCE
IGVIHVRDVTDLVREKSNNVTKSDIYSIINKPWFVPDTTPLSVQLHNFRYKRRHLALVVD
EEEEEEHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHEEEEEE
EYGTLQGAVTLEDILEEIVGDISDEHDVVPESLITSISENEFHIGGGAPIRDVNRQLRWN
CCCCCCCCEEHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEECCCCCHHHHHHHHCCC
LPEEASTLAGLILHDVERIPEEGEMFHLHGFLFKILKKNGNTISLLSVTTSHKSSDAQQP
CCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC
QG
CC
>Mature Secondary Structure
MLIIVALSLLASAFFSAAETAFTSVSPSSIHKLVVSGNRRAKVVDALTARKELVISTLLI
CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
GNTVANVAASSVATAWLVGLLGSEGLVVSTVTVTCLILLFSEVLPKTYALQNPEKISLRT
HHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHH
SVIVHACFLLLSPIAVSIRYIVDFVVKILGMRGEREMISAVDAMRNLILLHESKGTMFQQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEECCCCCHHHH
DLDMLSSVLDLAETEISQVMTHRKNLFALNIDEEVGVLIKQILQSSHSRIPIWKEREESI
HHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCE
IGVIHVRDVTDLVREKSNNVTKSDIYSIINKPWFVPDTTPLSVQLHNFRYKRRHLALVVD
EEEEEEHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCEEEECCHHHHHHHEEEEEE
EYGTLQGAVTLEDILEEIVGDISDEHDVVPESLITSISENEFHIGGGAPIRDVNRQLRWN
CCCCCCCCEEHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCEEECCCCCHHHHHHHHCCC
LPEEASTLAGLILHDVERIPEEGEMFHLHGFLFKILKKNGNTISLLSVTTSHKSSDAQQP
CCHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCC
QG
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]