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The map label for this gene is ftsY [H]

Identifier: 88606999

GI number: 88606999

Start: 1296673

End: 1297590

Strand: Reverse

Name: ftsY [H]

Synonym: APH_1227

Alternate gene names: 88606999

Gene position: 1297590-1296673 (Counterclockwise)

Preceding gene: 88607826

Following gene: 88607730

Centisome position: 88.19

GC content: 40.52

Gene sequence:

>918_bases
ATGTCGTCAAATGAGAGTTTCTGGCAAAGCCTGAAGAGAGGGTTGTCCAAAACTTCTGCTAGGTTAAGTGAAGGAATTAG
AAACATATTTGGTGGAAAAGCCGATGTTGATCAAAGCACTTTAAAAGCCTTACGTGATCTACTTATCTCTACCGATATGG
GGCCTGACGTAGCTGATTTTTTTACTCAAAAAATTTCCACCCTGAAATTTACTGATTCAGTTGCAGAAGAAGTACGCCTA
AAACTCGCTTCTGAGATTGAGAATTTTTTGCAACCAAGATCTGCCCCGATTACCATAACTCATACACCTCATATTATTCT
TCTATGTGGAGTAAATGGCAGCGGTAAAACAACTACTGTTGCGAAATTAGCGCATAAGTTTATGAAGAAAAATATGTCTG
TCATAATAGGTGCGTGTGACACTTTCCGCGCTGCAGCCGTGGAGCAACTTAACGTTTGGGCTGAAAGAATATCTTGCCCC
ATAGTAACGGGCACTATTGGTGCTGATGCAGCAAGTGTGGCTTACAAGACGGTTGAAAGAGCTGTAAAAGAGCCTTTTGA
TGTTGTGATTATAGACACGGCCGGTAGGCTGCATAATCATAAAAACTTAATGGAAGAGTTGGCGAAGATATGTCGTGTTA
TTCGCCGCCATGATGAGAAAGCCCCCCATGATATTATACTGGTATTAGACGCTACTATAGGGCAAAACACTTTCACTCAG
GTAGAAATGTTTTCCAGTTTTGTGGATGTAGGCGGTCTAATTTTGACTAAGTTGGATGGCACAGCTAAAGGTGGTGTAGT
TTTGCGTGTATCACAGAAATACAACTTAATGATACATGCTATAGGAACTGGCGAGGGAATAGAAGATTTGGAAGATTTTT
CTGCTACTAATTTTGCAAAGAGTTTACTGGAAATATAG

Upstream 100 bases:

>100_bases
TGTGGACGTAATGAAATATGCTGGCACTTTGGTTTATTATTCATGTCACCGTCGCAGTATAGCATTCTTGCTTGAAATGA
AAAACTTTTAGGTTCTCGTC

Downstream 100 bases:

>100_bases
AATTGCTAAGTCTGCGTCTCTAGTTCCACGGTCCCTCATCGTGATCATTCAGGGTCTAGTCCCATAAATCTGGGGATGAT
ATTGGTCACATCACTAGATT

Product: signal recognition particle-docking protein FtsY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MSSNESFWQSLKRGLSKTSARLSEGIRNIFGGKADVDQSTLKALRDLLISTDMGPDVADFFTQKISTLKFTDSVAEEVRL
KLASEIENFLQPRSAPITITHTPHIILLCGVNGSGKTTTVAKLAHKFMKKNMSVIIGACDTFRAAAVEQLNVWAERISCP
IVTGTIGADAASVAYKTVERAVKEPFDVVIIDTAGRLHNHKNLMEELAKICRVIRRHDEKAPHDIILVLDATIGQNTFTQ
VEMFSSFVDVGGLILTKLDGTAKGGVVLRVSQKYNLMIHAIGTGEGIEDLEDFSATNFAKSLLEI

Sequences:

>Translated_305_residues
MSSNESFWQSLKRGLSKTSARLSEGIRNIFGGKADVDQSTLKALRDLLISTDMGPDVADFFTQKISTLKFTDSVAEEVRL
KLASEIENFLQPRSAPITITHTPHIILLCGVNGSGKTTTVAKLAHKFMKKNMSVIIGACDTFRAAAVEQLNVWAERISCP
IVTGTIGADAASVAYKTVERAVKEPFDVVIIDTAGRLHNHKNLMEELAKICRVIRRHDEKAPHDIILVLDATIGQNTFTQ
VEMFSSFVDVGGLILTKLDGTAKGGVVLRVSQKYNLMIHAIGTGEGIEDLEDFSATNFAKSLLEI
>Mature_304_residues
SSNESFWQSLKRGLSKTSARLSEGIRNIFGGKADVDQSTLKALRDLLISTDMGPDVADFFTQKISTLKFTDSVAEEVRLK
LASEIENFLQPRSAPITITHTPHIILLCGVNGSGKTTTVAKLAHKFMKKNMSVIIGACDTFRAAAVEQLNVWAERISCPI
VTGTIGADAASVAYKTVERAVKEPFDVVIIDTAGRLHNHKNLMEELAKICRVIRRHDEKAPHDIILVLDATIGQNTFTQV
EMFSSFVDVGGLILTKLDGTAKGGVVLRVSQKYNLMIHAIGTGEGIEDLEDFSATNFAKSLLEI

Specific function: Functional homolog of SRP receptor. Probably involved in the reception and insertion of a subset of proteins at the membrane [H]

COG id: COG0552

COG function: function code U; Signal recognition particle GTPase

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GTP-binding SRP family [H]

Homologues:

Organism=Homo sapiens, GI226371618, Length=200, Percent_Identity=37.5, Blast_Score=133, Evalue=3e-31,
Organism=Homo sapiens, GI4507215, Length=200, Percent_Identity=37.5, Blast_Score=132, Evalue=3e-31,
Organism=Homo sapiens, GI23308697, Length=305, Percent_Identity=27.8688524590164, Blast_Score=113, Evalue=2e-25,
Organism=Homo sapiens, GI295424842, Length=305, Percent_Identity=27.8688524590164, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI89061728, Length=135, Percent_Identity=38.5185185185185, Blast_Score=89, Evalue=4e-18,
Organism=Escherichia coli, GI1789874, Length=307, Percent_Identity=41.3680781758958, Blast_Score=223, Evalue=9e-60,
Organism=Escherichia coli, GI1788963, Length=299, Percent_Identity=28.7625418060201, Blast_Score=118, Evalue=4e-28,
Organism=Caenorhabditis elegans, GI17539958, Length=221, Percent_Identity=33.9366515837104, Blast_Score=131, Evalue=3e-31,
Organism=Caenorhabditis elegans, GI193206261, Length=220, Percent_Identity=33.1818181818182, Blast_Score=99, Evalue=3e-21,
Organism=Saccharomyces cerevisiae, GI6325345, Length=202, Percent_Identity=41.0891089108911, Blast_Score=146, Evalue=5e-36,
Organism=Saccharomyces cerevisiae, GI6320498, Length=307, Percent_Identity=27.6872964169381, Blast_Score=101, Evalue=2e-22,
Organism=Drosophila melanogaster, GI17647949, Length=220, Percent_Identity=35.9090909090909, Blast_Score=135, Evalue=4e-32,
Organism=Drosophila melanogaster, GI24641198, Length=305, Percent_Identity=27.5409836065574, Blast_Score=111, Evalue=6e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004390
- InterPro:   IPR003593
- InterPro:   IPR000897
- InterPro:   IPR013822 [H]

Pfam domain/function: PF00448 SRP54; PF02881 SRP54_N [H]

EC number: NA

Molecular weight: Translated: 33290; Mature: 33159

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSNESFWQSLKRGLSKTSARLSEGIRNIFGGKADVDQSTLKALRDLLISTDMGPDVADF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHH
FTQKISTLKFTDSVAEEVRLKLASEIENFLQPRSAPITITHTPHIILLCGVNGSGKTTTV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEEECCCCCCHHHH
AKLAHKFMKKNMSVIIGACDTFRAAAVEQLNVWAERISCPIVTGTIGADAASVAYKTVER
HHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHH
AVKEPFDVVIIDTAGRLHNHKNLMEELAKICRVIRRHDEKAPHDIILVLDATIGQNTFTQ
HHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHH
VEMFSSFVDVGGLILTKLDGTAKGGVVLRVSQKYNLMIHAIGTGEGIEDLEDFSATNFAK
HHHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHH
SLLEI
HHHCC
>Mature Secondary Structure 
SSNESFWQSLKRGLSKTSARLSEGIRNIFGGKADVDQSTLKALRDLLISTDMGPDVADF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHH
FTQKISTLKFTDSVAEEVRLKLASEIENFLQPRSAPITITHTPHIILLCGVNGSGKTTTV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCEEEEEEECCCCCCHHHH
AKLAHKFMKKNMSVIIGACDTFRAAAVEQLNVWAERISCPIVTGTIGADAASVAYKTVER
HHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHH
AVKEPFDVVIIDTAGRLHNHKNLMEELAKICRVIRRHDEKAPHDIILVLDATIGQNTFTQ
HHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHH
VEMFSSFVDVGGLILTKLDGTAKGGVVLRVSQKYNLMIHAIGTGEGIEDLEDFSATNFAK
HHHHHHHHHHCCEEEEECCCCCCCCEEEEEECCCCEEEEEECCCCCHHHHHHHHHHHHHH
SLLEI
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA