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The map label for this gene is rimM

Identifier: 88606853

GI number: 88606853

Start: 1336180

End: 1336695

Strand: Reverse

Name: rimM

Synonym: APH_1268

Alternate gene names: 88606853

Gene position: 1336695-1336180 (Counterclockwise)

Preceding gene: 88607590

Following gene: 88606964

Centisome position: 90.85

GC content: 38.95

Gene sequence:

>516_bases
GTGAATATTGATGACACGTTTATTCTACTTGGTGTGATTTATGCCGCGCATGGGGTGCGGGGGTGTGTCAAGATCAAGAC
TTTTACTCATGATCCATCTGATATAGCTGCGTATGGCCCTCTTACCGATGGTTCTGAGTCCTTGAAAGTGTCTGTAATGT
CAGTCATCAAAAATGGTTGTGTTATTGCTAAGATTAGCGGAATAGATGACAGATGTTCTGCTGAAGCGTTGAAAAACAAG
AAGCTTTATGTATCTTCTTCCTGCTTGCCCAAACTGAAAAATGACGAATTCTATAAGGATGAGCTCATAGGATTATCTGT
AAAGCTGCCGGATGATACAATATTTGGAATAGTAACCGAAGTGTTCAATTTCGGCTCAGGTGATATAGTAGAAATATCTA
CTCCTCAAGGAAAGAAGGAGATGTTCTCTTTTACTTCAAATATTTTTCCATCCATAGATATGAAAACACGAGAAATGACT
ATCGTGCCTCCAGAAATTGTTGGAGTATACAAATGA

Upstream 100 bases:

>100_bases
TTTTTAGCATGCTGCTTATAGCTTTCTTGTGTAAAAAATTGATAAGTTAAGCATACAGGAGTAGAATTGTCTTCTAGTCA
TGAAAACTCTCTGAGATATT

Downstream 100 bases:

>100_bases
TCTTCAACGTTCTAACAATCTTTCCGCAAATGTTTCCCGGCCCTCTTGGCGTATCTAATCTGGGTTCTGCTCTGAAAAAA
GGGCTGTGGACGTTGAACGT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MNIDDTFILLGVIYAAHGVRGCVKIKTFTHDPSDIAAYGPLTDGSESLKVSVMSVIKNGCVIAKISGIDDRCSAEALKNK
KLYVSSSCLPKLKNDEFYKDELIGLSVKLPDDTIFGIVTEVFNFGSGDIVEISTPQGKKEMFSFTSNIFPSIDMKTREMT
IVPPEIVGVYK

Sequences:

>Translated_171_residues
MNIDDTFILLGVIYAAHGVRGCVKIKTFTHDPSDIAAYGPLTDGSESLKVSVMSVIKNGCVIAKISGIDDRCSAEALKNK
KLYVSSSCLPKLKNDEFYKDELIGLSVKLPDDTIFGIVTEVFNFGSGDIVEISTPQGKKEMFSFTSNIFPSIDMKTREMT
IVPPEIVGVYK
>Mature_171_residues
MNIDDTFILLGVIYAAHGVRGCVKIKTFTHDPSDIAAYGPLTDGSESLKVSVMSVIKNGCVIAKISGIDDRCSAEALKNK
KLYVSSSCLPKLKNDEFYKDELIGLSVKLPDDTIFGIVTEVFNFGSGDIVEISTPQGKKEMFSFTSNIFPSIDMKTREMT
IVPPEIVGVYK

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=149, Percent_Identity=28.8590604026846, Blast_Score=66, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_ANAPZ (Q2GIL4)

Other databases:

- EMBL:   CP000235
- RefSeq:   YP_505787.1
- ProteinModelPortal:   Q2GIL4
- SMR:   Q2GIL4
- STRING:   Q2GIL4
- GeneID:   3930185
- GenomeReviews:   CP000235_GR
- KEGG:   aph:APH_1268
- NMPDR:   fig|212042.5.peg.1215
- TIGR:   APH_1268
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   KNILNFG
- PhylomeDB:   Q2GIL4
- ProtClustDB:   PRK14592
- BioCyc:   APHA212042:APH_1268-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 18681; Mature: 18681

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIDDTFILLGVIYAAHGVRGCVKIKTFTHDPSDIAAYGPLTDGSESLKVSVMSVIKNGC
CCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHCCE
VIAKISGIDDRCSAEALKNKKLYVSSSCLPKLKNDEFYKDELIGLSVKLPDDTIFGIVTE
EEEEECCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHEEEEEEECCCCHHHHHHHH
VFNFGSGDIVEISTPQGKKEMFSFTSNIFPSIDMKTREMTIVPPEIVGVYK
HHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEECHHHEEECC
>Mature Secondary Structure
MNIDDTFILLGVIYAAHGVRGCVKIKTFTHDPSDIAAYGPLTDGSESLKVSVMSVIKNGC
CCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHCCE
VIAKISGIDDRCSAEALKNKKLYVSSSCLPKLKNDEFYKDELIGLSVKLPDDTIFGIVTE
EEEEECCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHEEEEEEECCCCHHHHHHHH
VFNFGSGDIVEISTPQGKKEMFSFTSNIFPSIDMKTREMTIVPPEIVGVYK
HHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCEEEEECHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA