Click here to switch to the map view.

The map label for this gene is yfiO [C]

Identifier: 88606744

GI number: 88606744

Start: 1152453

End: 1153154

Strand: Reverse

Name: yfiO [C]

Synonym: APH_1087

Alternate gene names: 88606744

Gene position: 1153154-1152453 (Counterclockwise)

Preceding gene: 88607554

Following gene: 88606735

Centisome position: 78.38

GC content: 43.87

Gene sequence:

>702_bases
ATGAGTCTTCGTGGAGTTTTCTTTGTACTTTTCACTGTCCTTGCAGTATTTTCGGGAAGTGTTCATGCTGATGAAGCTAT
AGACGAAGGTGGCGTGCACGGCCTTTATGACCGAGCGTCAGTCCTATTCGAGAAGAAGAAGTACAAGGATGCCATAGCGA
TATTAAATAAAATAGAAGCCCTATATCCATTCTCTCAGGTAGCAATAGATGGGAGTTTGATGTCCGCAGAGGCGAATTAT
GAACTAGGAAATTATCGTGAAGCTGCAACCCTTGTCGAAGGGTATATCGGCATATACCCCAATAGTCCTGTTATCGATTA
TGCATACTACATAAGGATCGCGTCCAAATACATGCTGGTTCCCGATTTAGGTCTTGATGATTCCATAGCGAAAGAAGTCC
TAGAATACGCTGCAGAGTTTGTAAAGATGTTTCCAGAATCTGAGTACCTTGCCCCTGTGCAAGAGAAGCTGGGTCACCTC
AGGAATCATGTAGCAGCTAAGGAGTTTCTGACAGGAAGATTCTATATGAAGCGCGGAGAGTATATAGCAGCTATAAAGAG
ATTTTCCACACTTGTTAGGGAATACCCTGATTCAGCATATTTTCAAGAAGGTATGTACAGGTTGTCAGAGGCGTATAGCG
CTATAGGCGATAAGGATACAGCGAGTGTGTACACCAACATGTTGGCAGGCCCAGAAGCGTAA

Upstream 100 bases:

>100_bases
GAGTTTAGACATTGTAGCTTCGATCAGGATATTAAGGCTTGCCCCGTTATGGTCTTTGTGATTAAATCGCGCGAGCGTGG
GGTTTTTTCTGGTGCTACTA

Downstream 100 bases:

>100_bases
TTAATTTGGGCGCTAGCTAGAAGTGAGTCAAAGGGAACTTTAAGAACACAGCGCAATTGCTGAGAAGATGAGGAATAAGT
AGTAAATAGAAAAACTAAAA

Product: putative competence lipoprotein ComL

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 233; Mature: 232

Protein sequence:

>233_residues
MSLRGVFFVLFTVLAVFSGSVHADEAIDEGGVHGLYDRASVLFEKKKYKDAIAILNKIEALYPFSQVAIDGSLMSAEANY
ELGNYREAATLVEGYIGIYPNSPVIDYAYYIRIASKYMLVPDLGLDDSIAKEVLEYAAEFVKMFPESEYLAPVQEKLGHL
RNHVAAKEFLTGRFYMKRGEYIAAIKRFSTLVREYPDSAYFQEGMYRLSEAYSAIGDKDTASVYTNMLAGPEA

Sequences:

>Translated_233_residues
MSLRGVFFVLFTVLAVFSGSVHADEAIDEGGVHGLYDRASVLFEKKKYKDAIAILNKIEALYPFSQVAIDGSLMSAEANY
ELGNYREAATLVEGYIGIYPNSPVIDYAYYIRIASKYMLVPDLGLDDSIAKEVLEYAAEFVKMFPESEYLAPVQEKLGHL
RNHVAAKEFLTGRFYMKRGEYIAAIKRFSTLVREYPDSAYFQEGMYRLSEAYSAIGDKDTASVYTNMLAGPEA
>Mature_232_residues
SLRGVFFVLFTVLAVFSGSVHADEAIDEGGVHGLYDRASVLFEKKKYKDAIAILNKIEALYPFSQVAIDGSLMSAEANYE
LGNYREAATLVEGYIGIYPNSPVIDYAYYIRIASKYMLVPDLGLDDSIAKEVLEYAAEFVKMFPESEYLAPVQEKLGHLR
NHVAAKEFLTGRFYMKRGEYIAAIKRFSTLVREYPDSAYFQEGMYRLSEAYSAIGDKDTASVYTNMLAGPEA

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788947, Length=229, Percent_Identity=21.8340611353712, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26101; Mature: 25970

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: PS50005 TPR L=RR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLRGVFFVLFTVLAVFSGSVHADEAIDEGGVHGLYDRASVLFEKKKYKDAIAILNKIEA
CCCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYPFSQVAIDGSLMSAEANYELGNYREAATLVEGYIGIYPNSPVIDYAYYIRIASKYMLV
HCCHHHHHCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEC
PDLGLDDSIAKEVLEYAAEFVKMFPESEYLAPVQEKLGHLRNHVAAKEFLTGRFYMKRGE
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
YIAAIKRFSTLVREYPDSAYFQEGMYRLSEAYSAIGDKDTASVYTNMLAGPEA
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SLRGVFFVLFTVLAVFSGSVHADEAIDEGGVHGLYDRASVLFEKKKYKDAIAILNKIEA
CCHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LYPFSQVAIDGSLMSAEANYELGNYREAATLVEGYIGIYPNSPVIDYAYYIRIASKYMLV
HCCHHHHHCCCHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHEEC
PDLGLDDSIAKEVLEYAAEFVKMFPESEYLAPVQEKLGHLRNHVAAKEFLTGRFYMKRGE
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
YIAAIKRFSTLVREYPDSAYFQEGMYRLSEAYSAIGDKDTASVYTNMLAGPEA
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]