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The map label for this gene is ywbI [H]

Identifier: 88196484

GI number: 88196484

Start: 2626357

End: 2627184

Strand: Reverse

Name: ywbI [H]

Synonym: SAOUHSC_02852

Alternate gene names: 88196484

Gene position: 2627184-2626357 (Counterclockwise)

Preceding gene: 88196487

Following gene: 88196483

Centisome position: 93.12

GC content: 33.33

Gene sequence:

>828_bases
ATGACTAATGCTTCCAAATCATTATATATTGCACAACCTACAATTAGTAAAGCAATTAAAGATATTGAAAATGAAATGGG
CACGCCCTTATTTGATAGAAGTAAAAGACATTTAATTCTTACCGATGCAGGTCAAATTTTTTATGAGAAAAGTAAAGAAA
TTGTTGCACTGTATGATTATTTACCATCTGAAATGGAACGCTTGAATGGACTGGAAACAGGACATATAAACATGGGCATG
TCGGCAGTCATGAATATGAAGATTCTTATCAATATTCTTGGTGCATTCCATCAACAATATCCAAATGTTACATATAATTT
GATAGAAAATGGCGGTAAAACAATTGAACAGCAAATTATCAATGATGAAGTAGATATAGGCGTGACCACTTTGCCAGTCG
ATCATCATATTTTCGATTATACTACCCTAGATAAGGAAGATTTGCGACTTATCGTGAGCAGAGAGCATCGACTCGCAAAA
TATGAAACTGTTAAACTCGAAGATTTAGCAGGTGAAGACTTCATTTTATTTAATAAAGACTTTTACTTGAATGATAAAAT
TATTGAAAATGCTAAAAACGTTGGCTTTGTTCCGAATACTGTAGCGCAAATTTCACAATGGCATGTTATAGAAGATTTAG
TTACGAATGAATTAGGTATTAGTATTTTACCAACATCAATTTCAGAGCAACTAAATGGAGATGTGAAGCTGCTACGCATT
GAAGATGCTCATGTACATTGGGAATTAGGTGTTGTTTGGAAGAAGGATAAACAATTAAGTCATGCCACAACGAAATGGAT
AGAATTTTTGAAAGACCGTTTAGGCTAA

Upstream 100 bases:

>100_bases
AAGTTGTGTATAATGAAATAAACGTGTTGAAATAGTTAGGATGATGTTAGTGGATATCAAACATATGAAATATTTTATTG
AAGTCGTTAAGCAAGGAGGC

Downstream 100 bases:

>100_bases
CATATTAATAAAGCACTCATTATTTAAGGCGCATCATTACGTGGGTCATTGAAATAATGAGTGTTTTTTTGTGAAAATGA
AGTGAAATTTAGAGAGCGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 274

Protein sequence:

>275_residues
MTNASKSLYIAQPTISKAIKDIENEMGTPLFDRSKRHLILTDAGQIFYEKSKEIVALYDYLPSEMERLNGLETGHINMGM
SAVMNMKILINILGAFHQQYPNVTYNLIENGGKTIEQQIINDEVDIGVTTLPVDHHIFDYTTLDKEDLRLIVSREHRLAK
YETVKLEDLAGEDFILFNKDFYLNDKIIENAKNVGFVPNTVAQISQWHVIEDLVTNELGISILPTSISEQLNGDVKLLRI
EDAHVHWELGVVWKKDKQLSHATTKWIEFLKDRLG

Sequences:

>Translated_275_residues
MTNASKSLYIAQPTISKAIKDIENEMGTPLFDRSKRHLILTDAGQIFYEKSKEIVALYDYLPSEMERLNGLETGHINMGM
SAVMNMKILINILGAFHQQYPNVTYNLIENGGKTIEQQIINDEVDIGVTTLPVDHHIFDYTTLDKEDLRLIVSREHRLAK
YETVKLEDLAGEDFILFNKDFYLNDKIIENAKNVGFVPNTVAQISQWHVIEDLVTNELGISILPTSISEQLNGDVKLLRI
EDAHVHWELGVVWKKDKQLSHATTKWIEFLKDRLG
>Mature_274_residues
TNASKSLYIAQPTISKAIKDIENEMGTPLFDRSKRHLILTDAGQIFYEKSKEIVALYDYLPSEMERLNGLETGHINMGMS
AVMNMKILINILGAFHQQYPNVTYNLIENGGKTIEQQIINDEVDIGVTTLPVDHHIFDYTTLDKEDLRLIVSREHRLAKY
ETVKLEDLAGEDFILFNKDFYLNDKIIENAKNVGFVPNTVAQISQWHVIEDLVTNELGISILPTSISEQLNGDVKLLRIE
DAHVHWELGVVWKKDKQLSHATTKWIEFLKDRLG

Specific function: Positive Regulatory Protein For The Cyn Operon. [C]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=233, Percent_Identity=26.6094420600858, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI1787879, Length=271, Percent_Identity=27.6752767527675, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI145693105, Length=269, Percent_Identity=24.1635687732342, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI2367136, Length=269, Percent_Identity=24.1635687732342, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1790399, Length=274, Percent_Identity=21.5328467153285, Blast_Score=87, Evalue=8e-19,
Organism=Escherichia coli, GI1788887, Length=281, Percent_Identity=24.9110320284698, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788748, Length=274, Percent_Identity=21.8978102189781, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI1787601, Length=166, Percent_Identity=26.5060240963855, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1788297, Length=236, Percent_Identity=22.4576271186441, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787530, Length=269, Percent_Identity=23.4200743494424, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1789506, Length=273, Percent_Identity=19.4139194139194, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788481, Length=273, Percent_Identity=23.4432234432234, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87081904, Length=160, Percent_Identity=25.625, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789204, Length=182, Percent_Identity=24.7252747252747, Blast_Score=62, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 31466; Mature: 31335

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNASKSLYIAQPTISKAIKDIENEMGTPLFDRSKRHLILTDAGQIFYEKSKEIVALYDY
CCCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHCCCCEEEHHHH
LPSEMERLNGLETGHINMGMSAVMNMKILINILGAFHQQYPNVTYNLIENGGKTIEQQII
CHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHC
NDEVDIGVTTLPVDHHIFDYTTLDKEDLRLIVSREHRLAKYETVKLEDLAGEDFILFNKD
CCCCCCCEEEECCCCCEECEECCCHHHHHHHHHHCHHHHHHEEEEECCCCCCEEEEECCC
FYLNDKIIENAKNVGFVPNTVAQISQWHVIEDLVTNELGISILPTSISEQLNGDVKLLRI
EEECHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHCCCCEEEEEE
EDAHVHWELGVVWKKDKQLSHATTKWIEFLKDRLG
ECCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TNASKSLYIAQPTISKAIKDIENEMGTPLFDRSKRHLILTDAGQIFYEKSKEIVALYDY
CCCCCEEEEECHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHCCCCEEEHHHH
LPSEMERLNGLETGHINMGMSAVMNMKILINILGAFHQQYPNVTYNLIENGGKTIEQQII
CHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHCCCHHHHHHHC
NDEVDIGVTTLPVDHHIFDYTTLDKEDLRLIVSREHRLAKYETVKLEDLAGEDFILFNKD
CCCCCCCEEEECCCCCEECEECCCHHHHHHHHHHCHHHHHHEEEEECCCCCCEEEEECCC
FYLNDKIIENAKNVGFVPNTVAQISQWHVIEDLVTNELGISILPTSISEQLNGDVKLLRI
EEECHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHCCCCEEEEEE
EDAHVHWELGVVWKKDKQLSHATTKWIEFLKDRLG
ECCEEEEEEEEEEECCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]