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The map label for this gene is yvnA [H]

Identifier: 88196453

GI number: 88196453

Start: 2597190

End: 2597648

Strand: Reverse

Name: yvnA [H]

Synonym: SAOUHSC_02819

Alternate gene names: 88196453

Gene position: 2597648-2597190 (Counterclockwise)

Preceding gene: 88196458

Following gene: 88196452

Centisome position: 92.07

GC content: 24.18

Gene sequence:

>459_bases
ATGAAGAGAGAAGTTATTTTAAAATTACAACAATTTATTATAGAAAGAGAAAATGCCGATAAAAGAAGACAGTATAAAAA
GGAAAATGAGGAACTAGATTTATCTCTAACACAATTTCATATCATAGAGTTGATTGATAATAATGATAAAGTGAATAATA
AATTTTTGTCTGAAATGTTAAATGTATCAAAACCAGCAATTACTAAATCGATAAAAAAACTTTTAGCGAAAGACTTAGTA
GTTGAATCGCACAATGAATTTAACAAAAGAGAAGTTAATTATTCATTAACACAAAAAGGAAAAAAATTATCTTATATACA
TGATGAATTACATGAAAAATCGGTAAAAAAATATGAAGAGGTACTTAAAGTCTTTGATGATGATGAAATGGCAGTTATTA
TAGAGTTTTTAAACCGTAGTATAGAAGAATTAAAAAAAGAAGATGGTTTAAATGATTAA

Upstream 100 bases:

>100_bases
GTAAATATATGTTAATTACAACAATATTTGACAAAAATGGGAGTGACAACAATAATATAGTTAACCGGTTAACTAATGAA
GAGGAGGAATAATAGTGGAT

Downstream 100 bases:

>100_bases
TAGTAATATCAGATTATATATTCTAGGATTTTTAGCATTTTTCGCATCATTGATTCAAAACATATACACGCCTATTATTC
CGAGACTATATGACGATTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MKREVILKLQQFIIERENADKRRQYKKENEELDLSLTQFHIIELIDNNDKVNNKFLSEMLNVSKPAITKSIKKLLAKDLV
VESHNEFNKREVNYSLTQKGKKLSYIHDELHEKSVKKYEEVLKVFDDDEMAVIIEFLNRSIEELKKEDGLND

Sequences:

>Translated_152_residues
MKREVILKLQQFIIERENADKRRQYKKENEELDLSLTQFHIIELIDNNDKVNNKFLSEMLNVSKPAITKSIKKLLAKDLV
VESHNEFNKREVNYSLTQKGKKLSYIHDELHEKSVKKYEEVLKVFDDDEMAVIIEFLNRSIEELKKEDGLND
>Mature_152_residues
MKREVILKLQQFIIERENADKRRQYKKENEELDLSLTQFHIIELIDNNDKVNNKFLSEMLNVSKPAITKSIKKLLAKDLV
VESHNEFNKREVNYSLTQKGKKLSYIHDELHEKSVKKYEEVLKVFDDDEMAVIIEFLNRSIEELKKEDGLND

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH marR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000835
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01047 MarR [H]

EC number: NA

Molecular weight: Translated: 18080; Mature: 18080

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKREVILKLQQFIIERENADKRRQYKKENEELDLSLTQFHIIELIDNNDKVNNKFLSEML
CCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHH
NVSKPAITKSIKKLLAKDLVVESHNEFNKREVNYSLTQKGKKLSYIHDELHEKSVKKYEE
HCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHH
VLKVFDDDEMAVIIEFLNRSIEELKKEDGLND
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKREVILKLQQFIIERENADKRRQYKKENEELDLSLTQFHIIELIDNNDKVNNKFLSEML
CCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHH
NVSKPAITKSIKKLLAKDLVVESHNEFNKREVNYSLTQKGKKLSYIHDELHEKSVKKYEE
HCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHH
VLKVFDDDEMAVIIEFLNRSIEELKKEDGLND
HHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]