Click here to switch to the map view.

The map label for this gene is nreC

Identifier: 88196315

GI number: 88196315

Start: 2458898

End: 2459500

Strand: Reverse

Name: nreC

Synonym: SAOUHSC_02675

Alternate gene names: 88196315

Gene position: 2459500-2458898 (Counterclockwise)

Preceding gene: 88196316

Following gene: 88196311

Centisome position: 87.17

GC content: 32.84

Gene sequence:

>603_bases
ATGATTTTAAATTATCAAAATGATATGGAAGTTGTTGCAACGGCTGCAGATGGCGTCGAAGCTTACCAAAAAGTAATGGA
ATATAAACCTGATGTGTTACTAATGGATTTAAGTATGCCACCAGGTGAGTCAGGTCTTATCGCTACGAGTAAAATTGCTG
ACAGTTTTCCTGAAACTAAAATACTAATATTAACAATGTTTGATGATGAGGAGTATTTGTTCCATGTGTTGCGTAATGGT
GCGAAAGGTTACATATTGAAAAATGCACCTGATGAACAATTATTGTTAGCTATTCGAACTGTATATAAAGGTGAAACATA
TGTAGATATGAAACTTACAACATCTTTAGTGAATGAATTTGTATCTAATTCAAATCAGGACACTGCAAACACAACAGATC
CTTTTAAAATCTTATCAAAACGAGAACTAGAAATATTGCCACTTATTGCCAAAGGTTACGGGAATAAAGAAATTGCAGAG
AAATTATTTGTATCTGTGAAAACAGTAGAAGCACATAAGACGCATATTATGACAAAGCTTGGCTTAAAGAGTAAACCTGA
GCTAGTTGAATATGCATTGAAAAAGAAATTATTAGAGTTTTAG

Upstream 100 bases:

>100_bases
AATGTTACATTGAACATTCCAATTTGAAACATACATTGGGGGAATAAAATTGAAAATAGTCATTGCCGATGATCACGCTG
TTGTCCGTACGGGGTTCTCT

Downstream 100 bases:

>100_bases
AGTTTGAAATTAATATAATTCAGTATAAAAGCGCGAGAGGAAATGATTATCTTCTGGCGCTTTTGTATGTTTCGAAATAT
ATTTTTTTATAAATCGAATG

Product: hypothetical protein

Products: NA

Alternate protein names: Nitrogen regulation protein C

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MILNYQNDMEVVATAADGVEAYQKVMEYKPDVLLMDLSMPPGESGLIATSKIADSFPETKILILTMFDDEEYLFHVLRNG
AKGYILKNAPDEQLLLAIRTVYKGETYVDMKLTTSLVNEFVSNSNQDTANTTDPFKILSKRELEILPLIAKGYGNKEIAE
KLFVSVKTVEAHKTHIMTKLGLKSKPELVEYALKKKLLEF

Sequences:

>Translated_200_residues
MILNYQNDMEVVATAADGVEAYQKVMEYKPDVLLMDLSMPPGESGLIATSKIADSFPETKILILTMFDDEEYLFHVLRNG
AKGYILKNAPDEQLLLAIRTVYKGETYVDMKLTTSLVNEFVSNSNQDTANTTDPFKILSKRELEILPLIAKGYGNKEIAE
KLFVSVKTVEAHKTHIMTKLGLKSKPELVEYALKKKLLEF
>Mature_200_residues
MILNYQNDMEVVATAADGVEAYQKVMEYKPDVLLMDLSMPPGESGLIATSKIADSFPETKILILTMFDDEEYLFHVLRNG
AKGYILKNAPDEQLLLAIRTVYKGETYVDMKLTTSLVNEFVSNSNQDTANTTDPFKILSKRELEILPLIAKGYGNKEIAE
KLFVSVKTVEAHKTHIMTKLGLKSKPELVEYALKKKLLEF

Specific function: Member of the two-component regulatory system nreB/nreC involved in the control of dissimilatory nitrate/nitrite reduction in response to oxygen. Phosphorylated nreC binds to a GC-rich palindromic sequence at the promoters of the nitrate (narGHJI) and nit

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain

Homologues:

Organism=Escherichia coli, GI1788222, Length=190, Percent_Identity=35.7894736842105, Blast_Score=109, Evalue=1e-25,
Organism=Escherichia coli, GI1788521, Length=176, Percent_Identity=36.3636363636364, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1788712, Length=192, Percent_Identity=30.2083333333333, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI1786747, Length=196, Percent_Identity=30.1020408163265, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1790102, Length=189, Percent_Identity=30.1587301587302, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1787473, Length=165, Percent_Identity=33.3333333333333, Blast_Score=67, Evalue=6e-13,
Organism=Escherichia coli, GI1788546, Length=185, Percent_Identity=29.1891891891892, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NREC_STAA1 (A7X623)

Other databases:

- EMBL:   AP009324
- RefSeq:   YP_001442965.1
- ProteinModelPortal:   A7X623
- SMR:   A7X623
- STRING:   A7X623
- EnsemblBacteria:   EBSTAT00000002843
- GeneID:   5559412
- GenomeReviews:   AP009324_GR
- KEGG:   saw:SAHV_2375
- eggNOG:   COG2197
- GeneTree:   EBGT00050000024054
- HOGENOM:   HBG753323
- OMA:   FKEADWI
- ProtClustDB:   CLSK885949
- BioCyc:   SAUR418127:SAHV_2375-MONOMER
- GO:   GO:0005737
- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991
- Gene3D:   G3DSA:1.10.10.10
- PRINTS:   PR00038
- SMART:   SM00421
- SMART:   SM00448

Pfam domain/function: PF00196 GerE; PF00072 Response_reg; SSF46894 Bipartite_resp_reg_C-effector; SSF52172 CheY_like

EC number: NA

Molecular weight: Translated: 22527; Mature: 22527

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS00622 HTH_LUXR_1; PS50043 HTH_LUXR_2; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILNYQNDMEVVATAADGVEAYQKVMEYKPDVLLMDLSMPPGESGLIATSKIADSFPETK
CEECCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEHHHHHCCCCCCE
ILILTMFDDEEYLFHVLRNGAKGYILKNAPDEQLLLAIRTVYKGETYVDMKLTTSLVNEF
EEEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHH
VSNSNQDTANTTDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKL
HHCCCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GLKSKPELVEYALKKKLLEF
CCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MILNYQNDMEVVATAADGVEAYQKVMEYKPDVLLMDLSMPPGESGLIATSKIADSFPETK
CEECCCCCCEEEEEHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEHHHHHCCCCCCE
ILILTMFDDEEYLFHVLRNGAKGYILKNAPDEQLLLAIRTVYKGETYVDMKLTTSLVNEF
EEEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHH
VSNSNQDTANTTDPFKILSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMTKL
HHCCCCCCCCCCCHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
GLKSKPELVEYALKKKLLEF
CCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA