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The map label for this gene is secY

Identifier: 88196142

GI number: 88196142

Start: 2307649

End: 2308941

Strand: Reverse

Name: secY

Synonym: SAOUHSC_02491

Alternate gene names: 88196142

Gene position: 2308941-2307649 (Counterclockwise)

Preceding gene: 88196143

Following gene: 88196141

Centisome position: 81.84

GC content: 34.57

Gene sequence:

>1293_bases
ATGATTCAAACCCTTGTGAACTTCTTTAGAACAAAAGAGGTTCGTAACAAGATTTTCTTCACACTAGCAATGTTAGTAAT
TTTTAAAATAGGGACTTATATACCAGCTCCAGGAGTAAATCCTGCAGCTTTTGATAATCCCCAAGGTTCTCAAGGTGCCA
CTGAGTTATTAAATACTTTTGGTGGCGGAGCCTTGAAACGATTTTCTATTTTTGCAATGGGTATTGTACCCTACATCACT
GCATCAATCGTAATGCAATTATTACAAATGGATATTGTCCCTAAATTCTCAGAATGGGCAAAACAAGGTGAAGTAGGTAG
AAGAAAGTTAAATAACGTTACTCGTTATTTAGCAATTTCTTTAGCATTTATCCAATCTATAGGTATGGCATTCCAATTTA
ATAATTATCTCAAAGGTGCGCTGATTATCAATCAGTCAATTATGAGTTATTTATTAATAGCACTAGTTTTGACAGCAGGA
ACTGCTTTCTTAATATGGCTTGGTGATCAAATCACTCAGTTCGGTGTTGGTAATGGTATTTCTATTATCATATTTGCGGG
TATTTTATCAACGTTGCCAGCCAGTCTAATTCAATTTGGACAAACTGCGTTCGTTGGGCAAGAAGATACATCATTAGCAT
GGTTGAAAGTATTAGGACTTTTAGTGTCACTGATACTATTAACTGTAGGTGCTATTTATGTACTTGAAGCCGTTCGTAAA
ATTCCGATTCAATATGCTAAGAAACAAACTGCTCAAAGATTAGGTTCACAGGCAACTTATCTACCTTTAAAAGTGAACTC
AGCCGGTGTTATTCCTGTAATCTTTGCAATGGCGTTCTTCTTACTGCCTAGAACATTAACGTTGTTCTATCCAGATAAAG
AATGGGCACAAAACATTGCGAATGCTGCAAATCCTTCAAGTAATGTTGGTATGGTTGTATATATTGTACTAATTATACTA
TTCACATACTTCTATGCATTTGTACAAGTTAATCCGGAAAAAATGGCTGATAACCTTAAGAAACAAGGTAGCTATGTTCC
AGGTATTAGACCTGGTGAACAAACCAAAAAATATATTACTAAAGTTTTATATCGTTTAACTTTTGTAGGTTCTATCTTCT
TAGCCGTTATTTCAATTCTACCGATATTAGCAACTAAGTTTATGGGATTACCACAATCAATTCAGATTGGTGGTACAAGT
TTACTTATCGTTATTGGTGTAGCGATTGAAACAATGAAATCTTTAGAAGCTCAAGTATCTCAAAAAGAATATAAAGGCTT
TGGTGGTAGATAA

Upstream 100 bases:

>100_bases
ATGGTTCACTTGATAAGAAATTGACAGTGAAAGCTCATAAATTCTCAGCTTCAGCAGCAGAAGCTATTGATGCTAAAGGT
GGAGCACACGAGGTGATCTA

Downstream 100 bases:

>100_bases
TTTTAGGAGGGCACTTATGAATATCATTTTGATGGGTTTACCTGGCGCAGGTAAAGGAACTCAAGCAAGTGAAATTGTCA
AGAAATTCCCAATACCCCAC

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 430

Protein sequence:

>430_residues
MIQTLVNFFRTKEVRNKIFFTLAMLVIFKIGTYIPAPGVNPAAFDNPQGSQGATELLNTFGGGALKRFSIFAMGIVPYIT
ASIVMQLLQMDIVPKFSEWAKQGEVGRRKLNNVTRYLAISLAFIQSIGMAFQFNNYLKGALIINQSIMSYLLIALVLTAG
TAFLIWLGDQITQFGVGNGISIIIFAGILSTLPASLIQFGQTAFVGQEDTSLAWLKVLGLLVSLILLTVGAIYVLEAVRK
IPIQYAKKQTAQRLGSQATYLPLKVNSAGVIPVIFAMAFFLLPRTLTLFYPDKEWAQNIANAANPSSNVGMVVYIVLIIL
FTYFYAFVQVNPEKMADNLKKQGSYVPGIRPGEQTKKYITKVLYRLTFVGSIFLAVISILPILATKFMGLPQSIQIGGTS
LLIVIGVAIETMKSLEAQVSQKEYKGFGGR

Sequences:

>Translated_430_residues
MIQTLVNFFRTKEVRNKIFFTLAMLVIFKIGTYIPAPGVNPAAFDNPQGSQGATELLNTFGGGALKRFSIFAMGIVPYIT
ASIVMQLLQMDIVPKFSEWAKQGEVGRRKLNNVTRYLAISLAFIQSIGMAFQFNNYLKGALIINQSIMSYLLIALVLTAG
TAFLIWLGDQITQFGVGNGISIIIFAGILSTLPASLIQFGQTAFVGQEDTSLAWLKVLGLLVSLILLTVGAIYVLEAVRK
IPIQYAKKQTAQRLGSQATYLPLKVNSAGVIPVIFAMAFFLLPRTLTLFYPDKEWAQNIANAANPSSNVGMVVYIVLIIL
FTYFYAFVQVNPEKMADNLKKQGSYVPGIRPGEQTKKYITKVLYRLTFVGSIFLAVISILPILATKFMGLPQSIQIGGTS
LLIVIGVAIETMKSLEAQVSQKEYKGFGGR
>Mature_430_residues
MIQTLVNFFRTKEVRNKIFFTLAMLVIFKIGTYIPAPGVNPAAFDNPQGSQGATELLNTFGGGALKRFSIFAMGIVPYIT
ASIVMQLLQMDIVPKFSEWAKQGEVGRRKLNNVTRYLAISLAFIQSIGMAFQFNNYLKGALIINQSIMSYLLIALVLTAG
TAFLIWLGDQITQFGVGNGISIIIFAGILSTLPASLIQFGQTAFVGQEDTSLAWLKVLGLLVSLILLTVGAIYVLEAVRK
IPIQYAKKQTAQRLGSQATYLPLKVNSAGVIPVIFAMAFFLLPRTLTLFYPDKEWAQNIANAANPSSNVGMVVYIVLIIL
FTYFYAFVQVNPEKMADNLKKQGSYVPGIRPGEQTKKYITKVLYRLTFVGSIFLAVISILPILATKFMGLPQSIQIGGTS
LLIVIGVAIETMKSLEAQVSQKEYKGFGGR

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family

Homologues:

Organism=Escherichia coli, GI1789696, Length=421, Percent_Identity=41.3301662707838, Blast_Score=265, Evalue=4e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SECY_STAA8 (O08387)

Other databases:

- EMBL:   U96620
- EMBL:   CP000253
- RefSeq:   YP_500959.1
- ProteinModelPortal:   O08387
- STRING:   O08387
- EnsemblBacteria:   EBSTAT00000028226
- GeneID:   3920868
- GenomeReviews:   CP000253_GR
- KEGG:   sao:SAOUHSC_02491
- eggNOG:   COG0201
- GeneTree:   EBGT00050000025044
- HOGENOM:   HBG565931
- OMA:   IQTYVIS
- ProtClustDB:   PRK09204
- BioCyc:   SAUR93061:SAOUHSC_02491-MONOMER
- InterPro:   IPR002208
- InterPro:   IPR023201
- PANTHER:   PTHR10906
- PIRSF:   PIRSF004557
- PRINTS:   PR00303
- TIGRFAMs:   TIGR00967

Pfam domain/function: PF00344 SecY; SSF103491 SecY

EC number: NA

Molecular weight: Translated: 47149; Mature: 47149

Theoretical pI: Translated: 10.37; Mature: 10.37

Prosite motif: PS00755 SECY_1; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1055b464)-; HASH(0xf95950c)-; HASH(0xfeee970)-; HASH(0x10265818)-; HASH(0x107802d4)-; HASH(0x100f522c)-; HASH(0x105b0008)-; HASH(0xf3724fc)-; HASH(0x10532420)-; HASH(0x101a0eb8)-;

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQTLVNFFRTKEVRNKIFFTLAMLVIFKIGTYIPAPGVNPAAFDNPQGSQGATELLNTF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
GGGALKRFSIFAMGIVPYITASIVMQLLQMDIVPKFSEWAKQGEVGRRKLNNVTRYLAIS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHHHHHH
LAFIQSIGMAFQFNNYLKGALIINQSIMSYLLIALVLTAGTAFLIWLGDQITQFGVGNGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECHHHHHHCCCCCH
SIIIFAGILSTLPASLIQFGQTAFVGQEDTSLAWLKVLGLLVSLILLTVGAIYVLEAVRK
HHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPIQYAKKQTAQRLGSQATYLPLKVNSAGVIPVIFAMAFFLLPRTLTLFYPDKEWAQNIA
HHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHEEEECCHHHHHHHH
NAANPSSNVGMVVYIVLIILFTYFYAFVQVNPEKMADNLKKQGSYVPGIRPGEQTKKYIT
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
KVLYRLTFVGSIFLAVISILPILATKFMGLPQSIQIGGTSLLIVIGVAIETMKSLEAQVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHH
QKEYKGFGGR
HHHHCCCCCH
>Mature Secondary Structure
MIQTLVNFFRTKEVRNKIFFTLAMLVIFKIGTYIPAPGVNPAAFDNPQGSQGATELLNTF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
GGGALKRFSIFAMGIVPYITASIVMQLLQMDIVPKFSEWAKQGEVGRRKLNNVTRYLAIS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHHHHHH
LAFIQSIGMAFQFNNYLKGALIINQSIMSYLLIALVLTAGTAFLIWLGDQITQFGVGNGI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECHHHHHHCCCCCH
SIIIFAGILSTLPASLIQFGQTAFVGQEDTSLAWLKVLGLLVSLILLTVGAIYVLEAVRK
HHHHHHHHHHHHHHHHHHHCCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IPIQYAKKQTAQRLGSQATYLPLKVNSAGVIPVIFAMAFFLLPRTLTLFYPDKEWAQNIA
HHHHHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHEEEECCHHHHHHHH
NAANPSSNVGMVVYIVLIILFTYFYAFVQVNPEKMADNLKKQGSYVPGIRPGEQTKKYIT
HCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
KVLYRLTFVGSIFLAVISILPILATKFMGLPQSIQIGGTSLLIVIGVAIETMKSLEAQVS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHH
QKEYKGFGGR
HHHHCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA