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The map label for this gene is 88195840

Identifier: 88195840

GI number: 88195840

Start: 2029598

End: 2031352

Strand: Reverse

Name: 88195840

Synonym: SAOUHSC_02161

Alternate gene names: NA

Gene position: 2031352-2029598 (Counterclockwise)

Preceding gene: 88195843

Following gene: 88195839

Centisome position: 72.0

GC content: 27.46

Gene sequence:

>1755_bases
ATGAAATTTAAGTCATTGATTACAACAACTTTAGCATTAGGTGTTTTAGCATCAACAGGTGCAAACTTTAATAATAATGA
AGCGTCTGCCGCAGCTAAGCCATTAGATAAATCATCAAGTTCGTTACACCATGGATATTCTAAAGTCCATGTTCCATATG
CAATCACTGTGAACGGTACAAGCCAAAATATTTTATCAAGCTTAACATTTAATAAGAATCAAAATATTAGTTATAAAGAT
TTAGAGGATAGAGTTAAATCAGTTTTAAAATCAGACAGAGGTATTAGTGATATAGATTTAAGACTATCGAAGCAAGCGAA
ATATACTGTTTACTTTAAAAATGGAACAAAGAAAGTTATCGATTTGAAAGCAGGTATTTACACAGCTGATTTAATTAATA
CAAGTGAAATTAAAGCTATTAATATTAACGTAGATACTAAAAAGCAAGTTGAAGATAAAAAGAAAGATAAAGCAAATTAC
CAAGTTCCATACACAATCACTGTGAACGGTACAAGCCAAAATATTTTATCAAACTTAACATTTAATAAGAATCAAAATAT
TAGTTACAAAGATTTAGAGGATAAAGTTAAATCAGTTTTAGAATCAAATAGAGGTATTACCGATGTTGATTTAAGATTAT
CGAAGCAAGCGAAATATACAGTTAATTTTAAAAATGGAACGAAGAAAGTTATCGATTTGAAATCAGGTATTTACACAGCG
AATTTAATAAATTCAAGTGATATTAAAAGTATCAATATTAACGTAGATACAAAAAAACATATCGAAAATAAAGCTAAAAG
AAACTATCAAGTTCCATATTCAATTAATTTAAATGGTACATCTACAAACATTTTATCGAATCTTTCATTTTCAAATAAAC
CTTGGACAAATTACAAAAATTTAACTAGTCAAATAAAATCAGTACTGAAGCATGATAGAGGTATTAGTGAACAAGATTTA
AAATATGCTAAGAAAGCTTATTATACTGTTTATTTTAAAAATGGTGGTAAAAGAATCTTACAGTTGAATTCAAAAAATTA
CACAGCAAACTTAGTTCATGCGAAAGATGTTAAGAGAATTGAAATTACTGTTAAAACAGGAACTAAAGCGAAAGCAGACA
GATATGTACCATACACAATTGCAGTAAATGGCACATCAACACCAATTTTATCAGATTTAAAATTTACAGGTGACCCACGT
GTAGGCTACAAAGATATCTCTAAAAAAGTTAAATCAGTATTGAAGCATGATAGAGGTATCGGGGAACGTGAATTAAAATA
TGCAAAAAAAGCAACTTACACAGTACATTTTAAAAATGGAACGAAAAAAGTGATTAACATAAATTCAAATATTAGCCAAC
TGAATCTGCTTTATGTTCAAGATATTAAAAAGATAGATATTGATGTTAAAACAGGAACTAAAGCGAAAGCGGATAGCTAT
GTACCATATACAATTGCAGTAAATGGCACATCAACACCAATTTTATCAAAACTTAAAATTTCGAATAAACAATTAATTAG
TTACAAATATTTAAATGACAAAGTGAAATCTGTATTAAAAAGTGAAAGAGGCATCAGTGATCTTGACTTAAAATTTGCGA
AACAAGCAAAATATACAGTATATTTCAAAAATGGAAAGAAACAAGTAGTGAATTTAAAATCAGACATCTTTACACCTAAT
TTATTTAGTGCCAAAGATATTAAAAAGATTGATATTGATGTAAAACAATACACTAAATCAAAAAAAAATAAATAA

Upstream 100 bases:

>100_bases
AGATAATTTATTATTAATATTCAGTTAATTCAAAAAATAGAGAAAGTCTGGCTATAATTAAGTTGCAAATACGAATTACA
CAAAAAAGGAGAGATAATTT

Downstream 100 bases:

>100_bases
ATCTAATAATGTGAAATTCCCAGTAACAATAAATAAATTTGAAAACATAGTTTCAAATGAATTTGTGTTCTATAATGCAA
GCAAAATTACAATTAATGAT

Product: MHC class II analog protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 584; Mature: 584

Protein sequence:

>584_residues
MKFKSLITTTLALGVLASTGANFNNNEASAAAKPLDKSSSSLHHGYSKVHVPYAITVNGTSQNILSSLTFNKNQNISYKD
LEDRVKSVLKSDRGISDIDLRLSKQAKYTVYFKNGTKKVIDLKAGIYTADLINTSEIKAININVDTKKQVEDKKKDKANY
QVPYTITVNGTSQNILSNLTFNKNQNISYKDLEDKVKSVLESNRGITDVDLRLSKQAKYTVNFKNGTKKVIDLKSGIYTA
NLINSSDIKSININVDTKKHIENKAKRNYQVPYSINLNGTSTNILSNLSFSNKPWTNYKNLTSQIKSVLKHDRGISEQDL
KYAKKAYYTVYFKNGGKRILQLNSKNYTANLVHAKDVKRIEITVKTGTKAKADRYVPYTIAVNGTSTPILSDLKFTGDPR
VGYKDISKKVKSVLKHDRGIGERELKYAKKATYTVHFKNGTKKVININSNISQLNLLYVQDIKKIDIDVKTGTKAKADSY
VPYTIAVNGTSTPILSKLKISNKQLISYKYLNDKVKSVLKSERGISDLDLKFAKQAKYTVYFKNGKKQVVNLKSDIFTPN
LFSAKDIKKIDIDVKQYTKSKKNK

Sequences:

>Translated_584_residues
MKFKSLITTTLALGVLASTGANFNNNEASAAAKPLDKSSSSLHHGYSKVHVPYAITVNGTSQNILSSLTFNKNQNISYKD
LEDRVKSVLKSDRGISDIDLRLSKQAKYTVYFKNGTKKVIDLKAGIYTADLINTSEIKAININVDTKKQVEDKKKDKANY
QVPYTITVNGTSQNILSNLTFNKNQNISYKDLEDKVKSVLESNRGITDVDLRLSKQAKYTVNFKNGTKKVIDLKSGIYTA
NLINSSDIKSININVDTKKHIENKAKRNYQVPYSINLNGTSTNILSNLSFSNKPWTNYKNLTSQIKSVLKHDRGISEQDL
KYAKKAYYTVYFKNGGKRILQLNSKNYTANLVHAKDVKRIEITVKTGTKAKADRYVPYTIAVNGTSTPILSDLKFTGDPR
VGYKDISKKVKSVLKHDRGIGERELKYAKKATYTVHFKNGTKKVININSNISQLNLLYVQDIKKIDIDVKTGTKAKADSY
VPYTIAVNGTSTPILSKLKISNKQLISYKYLNDKVKSVLKSERGISDLDLKFAKQAKYTVYFKNGKKQVVNLKSDIFTPN
LFSAKDIKKIDIDVKQYTKSKKNK
>Mature_584_residues
MKFKSLITTTLALGVLASTGANFNNNEASAAAKPLDKSSSSLHHGYSKVHVPYAITVNGTSQNILSSLTFNKNQNISYKD
LEDRVKSVLKSDRGISDIDLRLSKQAKYTVYFKNGTKKVIDLKAGIYTADLINTSEIKAININVDTKKQVEDKKKDKANY
QVPYTITVNGTSQNILSNLTFNKNQNISYKDLEDKVKSVLESNRGITDVDLRLSKQAKYTVNFKNGTKKVIDLKSGIYTA
NLINSSDIKSININVDTKKHIENKAKRNYQVPYSINLNGTSTNILSNLSFSNKPWTNYKNLTSQIKSVLKHDRGISEQDL
KYAKKAYYTVYFKNGGKRILQLNSKNYTANLVHAKDVKRIEITVKTGTKAKADRYVPYTIAVNGTSTPILSDLKFTGDPR
VGYKDISKKVKSVLKHDRGIGERELKYAKKATYTVHFKNGTKKVININSNISQLNLLYVQDIKKIDIDVKTGTKAKADSY
VPYTIAVNGTSTPILSKLKISNKQLISYKYLNDKVKSVLKSERGISDLDLKFAKQAKYTVYFKNGKKQVVNLKSDIFTPN
LFSAKDIKKIDIDVKQYTKSKKNK

Specific function: Binds various plasma and ECM-proteins [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 6 MAP repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005298
- InterPro:   IPR016091 [H]

Pfam domain/function: PF03642 MAP [H]

EC number: NA

Molecular weight: Translated: 65575; Mature: 65575

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
0.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
0.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFKSLITTTLALGVLASTGANFNNNEASAAAKPLDKSSSSLHHGYSKVHVPYAITVNGT
CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCHHHCCCEEEEEEEEEEECCC
SQNILSSLTFNKNQNISYKDLEDRVKSVLKSDRGISDIDLRLSKQAKYTVYFKNGTKKVI
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEEECCCEEEE
DLKAGIYTADLINTSEIKAININVDTKKQVEDKKKDKANYQVPYTITVNGTSQNILSNLT
EEECCEEEEECCCCCCEEEEEECCCCHHHHHHHHHCCCCEECEEEEEECCCHHHHHHHCC
FNKNQNISYKDLEDKVKSVLESNRGITDVDLRLSKQAKYTVNFKNGTKKVIDLKSGIYTA
CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEEECCCCEEEEEECCCEEEE
NLINSSDIKSININVDTKKHIENKAKRNYQVPYSINLNGTSTNILSNLSFSNKPWTNYKN
EEECCCCCEEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCHHHHCCCCCCCCCCCCHHH
LTSQIKSVLKHDRGISEQDLKYAKKAYYTVYFKNGGKRILQLNSKNYTANLVHAKDVKRI
HHHHHHHHHHHCCCCCHHHHHHHCEEEEEEEEECCCEEEEEECCCCCEEEEEEECCCEEE
EITVKTGTKAKADRYVPYTIAVNGTSTPILSDLKFTGDPRVGYKDISKKVKSVLKHDRGI
EEEEECCCCCCCCCCCEEEEEECCCCCCEEECCEECCCCCCCHHHHHHHHHHHHHHHCCC
GERELKYAKKATYTVHFKNGTKKVININSNISQLNLLYVQDIKKIDIDVKTGTKAKADSY
CHHHHHHHHHEEEEEEEECCCEEEEEECCCCCCEEEEEEECCEEEEEEEECCCCCCCCCC
VPYTIAVNGTSTPILSKLKISNKQLISYKYLNDKVKSVLKSERGISDLDLKFAKQAKYTV
CCEEEEECCCCCCCCCEEECCCCEEEEEEHHHHHHHHHHHHHCCCCCCCHHHHCCCEEEE
YFKNGKKQVVNLKSDIFTPNLFSAKDIKKIDIDVKQYTKSKKNK
EEECCCEEEEEEHHHCCCCCCCCCCCCEEEECCHHHHHHHCCCC
>Mature Secondary Structure
MKFKSLITTTLALGVLASTGANFNNNEASAAAKPLDKSSSSLHHGYSKVHVPYAITVNGT
CCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCHHHCCCEEEEEEEEEEECCC
SQNILSSLTFNKNQNISYKDLEDRVKSVLKSDRGISDIDLRLSKQAKYTVYFKNGTKKVI
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEEECCCEEEE
DLKAGIYTADLINTSEIKAININVDTKKQVEDKKKDKANYQVPYTITVNGTSQNILSNLT
EEECCEEEEECCCCCCEEEEEECCCCHHHHHHHHHCCCCEECEEEEEECCCHHHHHHHCC
FNKNQNISYKDLEDKVKSVLESNRGITDVDLRLSKQAKYTVNFKNGTKKVIDLKSGIYTA
CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEEECCCCEEEEEECCCEEEE
NLINSSDIKSININVDTKKHIENKAKRNYQVPYSINLNGTSTNILSNLSFSNKPWTNYKN
EEECCCCCEEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCHHHHCCCCCCCCCCCCHHH
LTSQIKSVLKHDRGISEQDLKYAKKAYYTVYFKNGGKRILQLNSKNYTANLVHAKDVKRI
HHHHHHHHHHHCCCCCHHHHHHHCEEEEEEEEECCCEEEEEECCCCCEEEEEEECCCEEE
EITVKTGTKAKADRYVPYTIAVNGTSTPILSDLKFTGDPRVGYKDISKKVKSVLKHDRGI
EEEEECCCCCCCCCCCEEEEEECCCCCCEEECCEECCCCCCCHHHHHHHHHHHHHHHCCC
GERELKYAKKATYTVHFKNGTKKVININSNISQLNLLYVQDIKKIDIDVKTGTKAKADSY
CHHHHHHHHHEEEEEEEECCCEEEEEECCCCCCEEEEEEECCEEEEEEEECCCCCCCCCC
VPYTIAVNGTSTPILSKLKISNKQLISYKYLNDKVKSVLKSERGISDLDLKFAKQAKYTV
CCEEEEECCCCCCCCCEEECCCCEEEEEEHHHHHHHHHHHHHCCCCCCCHHHHCCCEEEE
YFKNGKKQVVNLKSDIFTPNLFSAKDIKKIDIDVKQYTKSKKNK
EEECCCEEEEEEHHHCCCCCCCCCCCCEEEECCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2726469 [H]