Click here to switch to the map view.

The map label for this gene is 88195746

Identifier: 88195746

GI number: 88195746

Start: 1953694

End: 1953963

Strand: Reverse

Name: 88195746

Synonym: SAOUHSC_02062

Alternate gene names: NA

Gene position: 1953963-1953694 (Counterclockwise)

Preceding gene: 88195747

Following gene: 88195745

Centisome position: 69.26

GC content: 32.96

Gene sequence:

>270_bases
ATGAAGTTGAACGAAGTATTCGCAACTAATTTAAGGGTAATCATGGCTAGAGATAACGTAAGTGTCCAAGATTTGCACAA
TGAAACTGGCGTATCAAGATCAACTATTAGTGGATATAAAAACGGAAAAGCTGAGATGGTTAACTTAAATGTATTAGATA
AATTGGCAGATGCTCTAGGTGTTAATGTAAGTGAACTATTTACTAGAAATCACAACACGCACAAATTAGAGGATTGGATT
AAAAAAAGTAAATGTATAGAGGTGGAATAA

Upstream 100 bases:

>100_bases
AGAAAAAGATACGCTGGCAAAGCGCTTAGATGACAATCCGGACGAATTACTAAAGTATGACAACATAACAATAAGACATG
CATATATAGAGGTGGAATAA

Downstream 100 bases:

>100_bases
ATGAGTATCGTAAAGATTAACGGTAAACCATATAAATTTACCGAACATGAAAATGAATTGATAAAAAAGAACGGTTTAAC
TCCAGGAATGGTTGCAAAAA

Product: helix-turn-helix DNA binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 89

Protein sequence:

>89_residues
MKLNEVFATNLRVIMARDNVSVQDLHNETGVSRSTISGYKNGKAEMVNLNVLDKLADALGVNVSELFTRNHNTHKLEDWI
KKSKCIEVE

Sequences:

>Translated_89_residues
MKLNEVFATNLRVIMARDNVSVQDLHNETGVSRSTISGYKNGKAEMVNLNVLDKLADALGVNVSELFTRNHNTHKLEDWI
KKSKCIEVE
>Mature_89_residues
MKLNEVFATNLRVIMARDNVSVQDLHNETGVSRSTISGYKNGKAEMVNLNVLDKLADALGVNVSELFTRNHNTHKLEDWI
KKSKCIEVE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10043; Mature: 10043

Theoretical pI: Translated: 7.61; Mature: 7.61

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNEVFATNLRVIMARDNVSVQDLHNETGVSRSTISGYKNGKAEMVNLNVLDKLADALG
CCCCCEECCCEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHC
VNVSELFTRNHNTHKLEDWIKKSKCIEVE
CCHHHHHHCCCCCHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKLNEVFATNLRVIMARDNVSVQDLHNETGVSRSTISGYKNGKAEMVNLNVLDKLADALG
CCCCCEECCCEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHC
VNVSELFTRNHNTHKLEDWIKKSKCIEVE
CCHHHHHHCCCCCHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA