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The map label for this gene is 88195708

Identifier: 88195708

GI number: 88195708

Start: 1926073

End: 1926510

Strand: Reverse

Name: 88195708

Synonym: SAOUHSC_02020

Alternate gene names: NA

Gene position: 1926510-1926073 (Counterclockwise)

Preceding gene: 88195709

Following gene: 88195707

Centisome position: 68.28

GC content: 38.58

Gene sequence:

>438_bases
ATGGATATTAACTGGAAATTGAGATTCAAAAACAAAGCAGTACTAACTGGTTTAGTTGGAGCATTGTTGCTATTTATCAA
GCAAGTCACGGATTTATTCGGATTAGATTTATCTACTCAATTAAATCAAGCTAGCGCAATTATAGGCGCTATCCTCACGT
TACTTACAGGTATTGGCGTTATTACTGACCCAACGTCAAAAGGCGTCTCAGATTCATCTATAGCACAGACATATCAAGCG
CCTAGAGATAGCAAAAAAGAAGAACAACAAGTTACGTGGAAATCATCACAAGACAGTAGTTTAACGCCGGAATTAAGCGC
GAAAGCACCAAAAGAATATGATACATCACAACCTTTCACAGACGCCTCTAACGATGTTGGCTTTGATGTGAATGAGTATC
ATCATGGAGGTGGCGACAATGCAAGCAAAATTAACTAA

Upstream 100 bases:

>100_bases
ATAAGTGATGTTTATTCAGGATCTCCGACATTGACCATTGAATAATTTTAAACGACTAATTTTTAGTCGTTTTTTTATTT
TGGATAAAAGGAGCAAACAA

Downstream 100 bases:

>100_bases
AAATGAGTTTATAGAGTGGTTGAAAACTTCTGAGGGAAAACAATTCAATGTGGACTTATGGTATGGATTTCAATGCTTTG
ATTATGCCAATGCTGGTTGG

Product: holin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MDINWKLRFKNKAVLTGLVGALLLFIKQVTDLFGLDLSTQLNQASAIIGAILTLLTGIGVITDPTSKGVSDSSIAQTYQA
PRDSKKEEQQVTWKSSQDSSLTPELSAKAPKEYDTSQPFTDASNDVGFDVNEYHHGGGDNASKIN

Sequences:

>Translated_145_residues
MDINWKLRFKNKAVLTGLVGALLLFIKQVTDLFGLDLSTQLNQASAIIGAILTLLTGIGVITDPTSKGVSDSSIAQTYQA
PRDSKKEEQQVTWKSSQDSSLTPELSAKAPKEYDTSQPFTDASNDVGFDVNEYHHGGGDNASKIN
>Mature_145_residues
MDINWKLRFKNKAVLTGLVGALLLFIKQVTDLFGLDLSTQLNQASAIIGAILTLLTGIGVITDPTSKGVSDSSIAQTYQA
PRDSKKEEQQVTWKSSQDSSLTPELSAKAPKEYDTSQPFTDASNDVGFDVNEYHHGGGDNASKIN

Specific function: Unknown

COG id: COG5546

COG function: function code S; Small integral membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15646; Mature: 15646

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDINWKLRFKNKAVLTGLVGALLLFIKQVTDLFGLDLSTQLNQASAIIGAILTLLTGIGV
CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
ITDPTSKGVSDSSIAQTYQAPRDSKKEEQQVTWKSSQDSSLTPELSAKAPKEYDTSQPFT
EECCCCCCCCHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DASNDVGFDVNEYHHGGGDNASKIN
CCCCCCCCCHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MDINWKLRFKNKAVLTGLVGALLLFIKQVTDLFGLDLSTQLNQASAIIGAILTLLTGIGV
CCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
ITDPTSKGVSDSSIAQTYQAPRDSKKEEQQVTWKSSQDSSLTPELSAKAPKEYDTSQPFT
EECCCCCCCCHHHHHHHHHCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
DASNDVGFDVNEYHHGGGDNASKIN
CCCCCCCCCHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA