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The map label for this gene is infC

Identifier: 88195487

GI number: 88195487

Start: 1683081

End: 1683608

Strand: Reverse

Name: infC

Synonym: SAOUHSC_01786

Alternate gene names: 88195487

Gene position: 1683608-1683081 (Counterclockwise)

Preceding gene: 88195488

Following gene: 88195486

Centisome position: 59.67

GC content: 34.66

Gene sequence:

>528_bases
GTGTCAACCATAGCAAAAGATCAAACTCAAATCAATGACAAAATTCGTGCAAAAGAATTACGTTTAATCGGTCAAGATGG
TGAACAAATTGGTGTTAAATCAAAGCGTGAAGCTTTAAAAATGGCTGAACGTGTAGATTTAGACTTAGTGGTCGTTGCAC
CGAATGCGAAACCACCAGTTGCAAGAATTATGGATTACGGTAAATTCAAATTCGAACAACAGAAAAAAGAAAAAGAAATG
AAAAAGAAACAAAAAATTATCAATGTTAAAGAAATTCGTTTAAGTCCAACAATTGAGGAACATGATTTCCAAACGAAGTT
GAAAAACGGACGTAAATTCTTAACTAAAGGCGATAAATGTAAAGTATCTATTCGTTTCAGAGGGCGTGCCATTACGCATA
AGGAAATTGGTCAACGTGTGCTAGAAAAATATGCAGATGAATGCAAAGATATAGCAACAGTTGAACAAAAACCTAAAATG
GACGGGCGTCAAATGTTTATCATGTTAGCGCCAACAGCTGAAAAATAA

Upstream 100 bases:

>100_bases
CAGGTTAATCACATTACACATAACTGTGTATAAGGAAGAGCGGGTATTTTATACCTGCTCTTCCTTTTTGCTTGGTGCAA
ATTTCGTAAAAATTTTGGAG

Downstream 100 bases:

>100_bases
TTAAAGCTATTACAGGAGGACTTATATTATGCCAAAAATGAAAACTCACCGCGGAGCAGCTAAACGTGTTAAAAGAACTG
CTTCAGGTCAATTAAAACGT

Product: translation initiation factor IF-3

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 174

Protein sequence:

>175_residues
MSTIAKDQTQINDKIRAKELRLIGQDGEQIGVKSKREALKMAERVDLDLVVVAPNAKPPVARIMDYGKFKFEQQKKEKEM
KKKQKIINVKEIRLSPTIEEHDFQTKLKNGRKFLTKGDKCKVSIRFRGRAITHKEIGQRVLEKYADECKDIATVEQKPKM
DGRQMFIMLAPTAEK

Sequences:

>Translated_175_residues
MSTIAKDQTQINDKIRAKELRLIGQDGEQIGVKSKREALKMAERVDLDLVVVAPNAKPPVARIMDYGKFKFEQQKKEKEM
KKKQKIINVKEIRLSPTIEEHDFQTKLKNGRKFLTKGDKCKVSIRFRGRAITHKEIGQRVLEKYADECKDIATVEQKPKM
DGRQMFIMLAPTAEK
>Mature_174_residues
STIAKDQTQINDKIRAKELRLIGQDGEQIGVKSKREALKMAERVDLDLVVVAPNAKPPVARIMDYGKFKFEQQKKEKEMK
KKQKIINVKEIRLSPTIEEHDFQTKLKNGRKFLTKGDKCKVSIRFRGRAITHKEIGQRVLEKYADECKDIATVEQKPKMD
GRQMFIMLAPTAEK

Specific function: IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins [H]

COG id: COG0290

COG function: function code J; Translation initiation factor 3 (IF-3)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IF-3 family [H]

Homologues:

Organism=Escherichia coli, GI1788012, Length=164, Percent_Identity=52.4390243902439, Blast_Score=161, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019813
- InterPro:   IPR001288
- InterPro:   IPR019815
- InterPro:   IPR019814 [H]

Pfam domain/function: PF00707 IF3_C; PF05198 IF3_N [H]

EC number: NA

Molecular weight: Translated: 20213; Mature: 20082

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: PS00938 IF3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTIAKDQTQINDKIRAKELRLIGQDGEQIGVKSKREALKMAERVDLDLVVVAPNAKPPV
CCCCCCCHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCH
ARIMDYGKFKFEQQKKEKEMKKKQKIINVKEIRLSPTIEEHDFQTKLKNGRKFLTKGDKC
HHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHEEECCCCCHHHHHHHHHCCCEECCCCCEE
KVSIRFRGRAITHKEIGQRVLEKYADECKDIATVEQKPKMDGRQMFIMLAPTAEK
EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC
>Mature Secondary Structure 
STIAKDQTQINDKIRAKELRLIGQDGEQIGVKSKREALKMAERVDLDLVVVAPNAKPPV
CCCCCCHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCH
ARIMDYGKFKFEQQKKEKEMKKKQKIINVKEIRLSPTIEEHDFQTKLKNGRKFLTKGDKC
HHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHEEECCCCCHHHHHHHHHCCCEECCCCCEE
KVSIRFRGRAITHKEIGQRVLEKYADECKDIATVEQKPKMDGRQMFIMLAPTAEK
EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA