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The map label for this gene is recO [H]

Identifier: 88195374

GI number: 88195374

Start: 1581016

End: 1581762

Strand: Reverse

Name: recO [H]

Synonym: SAOUHSC_01667

Alternate gene names: 88195374

Gene position: 1581762-1581016 (Counterclockwise)

Preceding gene: 161353525

Following gene: 88195372

Centisome position: 56.06

GC content: 32.66

Gene sequence:

>747_bases
ATGCGCCAAAAAGGGATTATCATCAAAGCAGTTGATTATGGTGAATCTGATAAAATTATCACGATTTTAAATGAGCATGG
TGCAAAAGTACCACTTATGGCAAGACGTGCTAAAAAAGTTAAGACGGGTTTACAAGCGCAAACGCAATTGTTTGTTTATG
GTTTGTTTATTTACAATCAGTGGCGAGGTATGGGAACGTTAAATTCTGTAGATGTTATTAGTCAACATTATAAATTACAA
ATGGACCTTTACGTAAGCAGTTATGCCGCTCTGGCAGCTGAAACTATTGAGCGCTCAATGGATGAAGGTGACATTGCACC
ATATAACTATCAATTATTACAATTTGTTCTTGAAAAAATAGAATCAGGTACATCTGCACAGTTAATGTCAGTCGTAGTTA
TGTTAAAGTGCATGAAACGATTTGGTTTTACTGCATCATTTAATCGCTGTGCTGTGAGTGGTAATGACACACAAGCAGAT
TTAATAGGTTATAGTTTTAAGTTTGACGGTGCGATTTCAAGGCAAGAGGCTTCTAAAGATGTACATGCAGTTATATTATC
GAATAAAACACTATATTTATTAGATGTATTACAAAAATTACCGATAGATAAAATGAATTCATTGAATATCCATCAAGAAA
TTATTGATGAAATGTCAGATATCATTTTAATGTTATATCGTGAATATGCAGGTATGTTTTTTAAAAGTCAGAAACTAATC
AACCAATTAAAAAGATTGGAACAATAA

Upstream 100 bases:

>100_bases
CAAAGTTCAAAGAGACTGGCGAAACAAAGTTAACTTTATTCGCCAAATTGGTTATGTTGAAGACCAAGATTAATCTTAAA
AGTGGTGAAGATAATTGTTA

Downstream 100 bases:

>100_bases
CATAAAATAATAAAAGGTATTCAAGTAGCCACATAGATGTGTTTATTTGAATACCTTTTTGAATAGAAAAGAGATACTGG
CAATTTTACTAACCAGTATC

Product: hypothetical protein

Products: NA

Alternate protein names: Recombination protein O [H]

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIYNQWRGMGTLNSVDVISQHYKLQ
MDLYVSSYAALAAETIERSMDEGDIAPYNYQLLQFVLEKIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQAD
LIGYSFKFDGAISRQEASKDVHAVILSNKTLYLLDVLQKLPIDKMNSLNIHQEIIDEMSDIILMLYREYAGMFFKSQKLI
NQLKRLEQ

Sequences:

>Translated_248_residues
MRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIYNQWRGMGTLNSVDVISQHYKLQ
MDLYVSSYAALAAETIERSMDEGDIAPYNYQLLQFVLEKIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQAD
LIGYSFKFDGAISRQEASKDVHAVILSNKTLYLLDVLQKLPIDKMNSLNIHQEIIDEMSDIILMLYREYAGMFFKSQKLI
NQLKRLEQ
>Mature_248_residues
MRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIYNQWRGMGTLNSVDVISQHYKLQ
MDLYVSSYAALAAETIERSMDEGDIAPYNYQLLQFVLEKIESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQAD
LIGYSFKFDGAISRQEASKDVHAVILSNKTLYLLDVLQKLPIDKMNSLNIHQEIIDEMSDIILMLYREYAGMFFKSQKLI
NQLKRLEQ

Specific function: Involved in DNA repair and recF pathway recombination [H]

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717 [H]

Pfam domain/function: PF02565 RecO; PF11967 RecO_N [H]

EC number: NA

Molecular weight: Translated: 28206; Mature: 28206

Theoretical pI: Translated: 8.89; Mature: 8.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIYNQ
CCCCCEEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
WRGMGTLNSVDVISQHYKLQMDLYVSSYAALAAETIERSMDEGDIAPYNYQLLQFVLEKI
HCCCCCCHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
ESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKFDGAISRQEASKD
CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHEEEEEEECCCCCHHHHCCC
VHAVILSNKTLYLLDVLQKLPIDKMNSLNIHQEIIDEMSDIILMLYREYAGMFFKSQKLI
CEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NQLKRLEQ
HHHHHHCC
>Mature Secondary Structure
MRQKGIIIKAVDYGESDKIITILNEHGAKVPLMARRAKKVKTGLQAQTQLFVYGLFIYNQ
CCCCCEEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
WRGMGTLNSVDVISQHYKLQMDLYVSSYAALAAETIERSMDEGDIAPYNYQLLQFVLEKI
HCCCCCCHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
ESGTSAQLMSVVVMLKCMKRFGFTASFNRCAVSGNDTQADLIGYSFKFDGAISRQEASKD
CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHEEEEEEECCCCCHHHHCCC
VHAVILSNKTLYLLDVLQKLPIDKMNSLNIHQEIIDEMSDIILMLYREYAGMFFKSQKLI
CEEEEECCCCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NQLKRLEQ
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA