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The map label for this gene is oppB2

Identifier: 88195107

GI number: 88195107

Start: 1323988

End: 1324974

Strand: Reverse

Name: oppB2

Synonym: SAOUHSC_01380

Alternate gene names: 88195107

Gene position: 1324974-1323988 (Counterclockwise)

Preceding gene: 88195108

Following gene: 88195106

Centisome position: 46.96

GC content: 31.31

Gene sequence:

>987_bases
ATGTTCATAATAAAGTCTATGTTGTATAGACTGATGCAAATGATAGTTGTTTTATTTGTTATTTCTACACTTACATTCAT
TTTAATGAAATTATCACCAGGCAATCCTGTTGATAAAATATTACATCTTGATGTAGCACAAGTGTCGACGGAACAAATAA
ATGCAACCAAAGATAAATTGGGATTAAATGATTCTTTATTGGTACAGTGGTGGCATTGGATGAATCATTTATTACATTTT
AATTTAGGAAAAAGTTTTGAATCAAAAGAACCGGTAACACAGATATTATTCAACTATGCACCCATAACATTACTCATATC
ATTTTCAACATTAGTAGTGTCGTTATGCATATCTATACCGCTCGGCATTATAGCAGCCAAACGATTTCATAAGTGGACGG
ATAAAGTGATTAGAGTGATCTCAACACTATCGATTAGTTTACCAGCGTTCTTTATCGGTATTATTTTATTATTTATTGTC
ACAAATTTAATGAATATAGATAGCGTTATACTAAGTCAGTTTATATTACCTGTAATCACGCTATCTTTAGGTATGTGTGC
ATACATCATTCGTTTAGTGCGTTCTAATTTATTGATGTTATTGCAAAGTAATATCGTACAAGCATCAAGATTACGCGGTA
TGAATGAACGTTATATTTTAATTCATGATTTACTAAAACCAACAATTTTGCCGATTATCCCATTACTAGGGATTTCACTT
GGCAGTCTAATAGGTGGTACTGTAGTGATTGAAAATTTATTTGATATACCTGGTATTGGTTATCTATTAATGGATAGTAT
TAAATCTCGAGATTATCCTGTTATTCAAGGATGCGTGTTATTTATTGGCTTCTTCGTTGTTATTATCAATACGATTGCTG
ATTTATTAACGTTATTACTTGATCCGAAGCAGCGTTTACAATTAGGAAATCCAAAAATCAAAACCAATACACCATTGATA
TCAGAAAGTAGTGACCGTCATGCATAA

Upstream 100 bases:

>100_bases
CTATAATGAACGTTAGTTCTTAATATGTAAGTTGCATATACATGCGCCATTCTCATGTAAAAAGAAAGTGTTAGTAACTT
ACACAAGGAGGGGGACTATT

Downstream 100 bases:

>100_bases
AATATTTTCAAAGAATAACCTGATATTTTTTGTATTCGTTGCATTTATTTTTGTGGTAATTGTACTGCAATTCTTTGTCA
GTAGTGAAAATGCAACCAAA

Product: oligopeptide transporter permease

Products: Ni2; [Cytoplasm]; ADP; phosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MFIIKSMLYRLMQMIVVLFVISTLTFILMKLSPGNPVDKILHLDVAQVSTEQINATKDKLGLNDSLLVQWWHWMNHLLHF
NLGKSFESKEPVTQILFNYAPITLLISFSTLVVSLCISIPLGIIAAKRFHKWTDKVIRVISTLSISLPAFFIGIILLFIV
TNLMNIDSVILSQFILPVITLSLGMCAYIIRLVRSNLLMLLQSNIVQASRLRGMNERYILIHDLLKPTILPIIPLLGISL
GSLIGGTVVIENLFDIPGIGYLLMDSIKSRDYPVIQGCVLFIGFFVVIINTIADLLTLLLDPKQRLQLGNPKIKTNTPLI
SESSDRHA

Sequences:

>Translated_328_residues
MFIIKSMLYRLMQMIVVLFVISTLTFILMKLSPGNPVDKILHLDVAQVSTEQINATKDKLGLNDSLLVQWWHWMNHLLHF
NLGKSFESKEPVTQILFNYAPITLLISFSTLVVSLCISIPLGIIAAKRFHKWTDKVIRVISTLSISLPAFFIGIILLFIV
TNLMNIDSVILSQFILPVITLSLGMCAYIIRLVRSNLLMLLQSNIVQASRLRGMNERYILIHDLLKPTILPIIPLLGISL
GSLIGGTVVIENLFDIPGIGYLLMDSIKSRDYPVIQGCVLFIGFFVVIINTIADLLTLLLDPKQRLQLGNPKIKTNTPLI
SESSDRHA
>Mature_328_residues
MFIIKSMLYRLMQMIVVLFVISTLTFILMKLSPGNPVDKILHLDVAQVSTEQINATKDKLGLNDSLLVQWWHWMNHLLHF
NLGKSFESKEPVTQILFNYAPITLLISFSTLVVSLCISIPLGIIAAKRFHKWTDKVIRVISTLSISLPAFFIGIILLFIV
TNLMNIDSVILSQFILPVITLSLGMCAYIIRLVRSNLLMLLQSNIVQASRLRGMNERYILIHDLLKPTILPIIPLLGISL
GSLIGGTVVIENLFDIPGIGYLLMDSIKSRDYPVIQGCVLFIGFFVVIINTIADLLTLLLDPKQRLQLGNPKIKTNTPLI
SESSDRHA

Specific function: Part of a transport system that may be involved in oligopeptide uptake. Probably responsible for the translocation of the substrate across the membrane. Important for S.aureus growth and survival during the infection process

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain

Homologues:

Organism=Escherichia coli, GI1789888, Length=311, Percent_Identity=32.475884244373, Blast_Score=174, Evalue=8e-45,
Organism=Escherichia coli, GI1787053, Length=303, Percent_Identity=29.3729372937294, Blast_Score=170, Evalue=1e-43,
Organism=Escherichia coli, GI1787497, Length=311, Percent_Identity=27.3311897106109, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=26.3313609467456, Blast_Score=141, Evalue=7e-35,
Organism=Escherichia coli, GI1787761, Length=327, Percent_Identity=30.2752293577982, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=28.9377289377289, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1788504, Length=361, Percent_Identity=23.5457063711911, Blast_Score=84, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): OPPB2_STAA3 (Q2FH55)

Other databases:

- EMBL:   CP000255
- RefSeq:   YP_493973.1
- ProteinModelPortal:   Q2FH55
- STRING:   Q2FH55
- EnsemblBacteria:   EBSTAT00000037252
- GeneID:   3914938
- GenomeReviews:   CP000255_GR
- KEGG:   saa:SAUSA300_1276
- eggNOG:   COG0601
- GeneTree:   EBGT00050000023945
- HOGENOM:   HBG724229
- OMA:   IREIANY
- ProtClustDB:   CLSK885311
- InterPro:   IPR000515

Pfam domain/function: PF00528 BPD_transp_1

EC number: NA

Molecular weight: Translated: 36815; Mature: 36815

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xea36370)-; HASH(0xea13f20)-; HASH(0xe14332c)-; HASH(0xe13dff8)-; HASH(0xdb110e8)-; HASH(0xd547778)-;

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCHHHHHCCCCCCCCCCCCCCCCCCCCH
>Mature Secondary Structure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CCHHHHHCCCCCCCCCCCCCCCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Ni2; [Periplasm]; ATP; H2O [C]

Specific reaction: Ni2+ [Periplasm] + ATP + H2O = Ni2+ [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA