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The map label for this gene is yxjO [H]

Identifier: 88194670

GI number: 88194670

Start: 885304

End: 886173

Strand: Reverse

Name: yxjO [H]

Synonym: SAOUHSC_00913

Alternate gene names: 88194670

Gene position: 886173-885304 (Counterclockwise)

Preceding gene: 88194676

Following gene: 88194666

Centisome position: 31.41

GC content: 27.24

Gene sequence:

>870_bases
ATGAATTTAGATTGGTACTATACATTTGTCATTTTAGCGAAGACGTTAAACTATCGATTAGCTAGTGAAGAAATTAATCT
CACTATACCTTCTATACATAAGCAAATTAAAAATTTAGAACAGCATCTCAATGTGAAACTATTTGAAACTTATAAAAATC
AAATTATCTTGACTGAAGATGGTCATACATTTCTTCCAATTGCGCAAAGTTTTATTGAACAATATGAAAGTGGCATCAAA
CATATCCAACTTAAAAAAACGATGTTTCAATCGAAATTAAATGTTGTCGTGTCTTCATATATCGCGACATTCATTATGCC
CAAATTTTTAAAATCTTTCTTTAACGAGCATCCTTTTATCGATGTTTCTCTTCATGTCAAAAATGAAAATATTGAAAAAG
ATATTAATAATCATACGTATGACATCGGGATTAGCAGAAATCAACCTAAACTAAGAGAAGTTCATTCTGAAAAAGTATGC
GAAGGTAAAATTGTATTGATTGCTCCCAATAAAGAGAATAATCATCTTCTAACTGAGGCATCTTTATTTGAAAAATACAA
AATAATAAGTGATAACCATCCAGAATATTGGTCATCACTTAAAAATAATATTTTAAATATTTATGAAAAAGCACAATTTC
TATCTATCAATGATGTGCATACTTCAATTAAATTAATCGAAATGAATCAAGGTATATCATTCCTGCCTCTTTATATAACA
ACAAATAGTGATTACAATATTTCGGTTATTAACACGAAAATTTTACAAGCACCTATTTCATTTACATATATATACAGCAA
AAAAGAAAGCCCAGAAATATTGGTGTTTATTAAATCATTTAAAAAGTATATTGCCAATGAACAATTATAA

Upstream 100 bases:

>100_bases
CCCCCTCGATAACCTCTGATATAATATTAATATTATTTTTATGCAATAAAAATTAAATATTATCTAATGAATTATTAACT
TTTTTGAAAGAGGTAAGTTC

Downstream 100 bases:

>100_bases
TAAATTTCAAATCTAAAAAACCAAGAATGCGATTAATCATCACATTCTTGGTTCAATTTTATTCATGAATTTTTTCAACA
TTAAACGTTAAGTTATTGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 289

Protein sequence:

>289_residues
MNLDWYYTFVILAKTLNYRLASEEINLTIPSIHKQIKNLEQHLNVKLFETYKNQIILTEDGHTFLPIAQSFIEQYESGIK
HIQLKKTMFQSKLNVVVSSYIATFIMPKFLKSFFNEHPFIDVSLHVKNENIEKDINNHTYDIGISRNQPKLREVHSEKVC
EGKIVLIAPNKENNHLLTEASLFEKYKIISDNHPEYWSSLKNNILNIYEKAQFLSINDVHTSIKLIEMNQGISFLPLYIT
TNSDYNISVINTKILQAPISFTYIYSKKESPEILVFIKSFKKYIANEQL

Sequences:

>Translated_289_residues
MNLDWYYTFVILAKTLNYRLASEEINLTIPSIHKQIKNLEQHLNVKLFETYKNQIILTEDGHTFLPIAQSFIEQYESGIK
HIQLKKTMFQSKLNVVVSSYIATFIMPKFLKSFFNEHPFIDVSLHVKNENIEKDINNHTYDIGISRNQPKLREVHSEKVC
EGKIVLIAPNKENNHLLTEASLFEKYKIISDNHPEYWSSLKNNILNIYEKAQFLSINDVHTSIKLIEMNQGISFLPLYIT
TNSDYNISVINTKILQAPISFTYIYSKKESPEILVFIKSFKKYIANEQL
>Mature_289_residues
MNLDWYYTFVILAKTLNYRLASEEINLTIPSIHKQIKNLEQHLNVKLFETYKNQIILTEDGHTFLPIAQSFIEQYESGIK
HIQLKKTMFQSKLNVVVSSYIATFIMPKFLKSFFNEHPFIDVSLHVKNENIEKDINNHTYDIGISRNQPKLREVHSEKVC
EGKIVLIAPNKENNHLLTEASLFEKYKIISDNHPEYWSSLKNNILNIYEKAQFLSINDVHTSIKLIEMNQGISFLPLYIT
TNSDYNISVINTKILQAPISFTYIYSKKESPEILVFIKSFKKYIANEQL

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=272, Percent_Identity=23.1617647058824, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33799; Mature: 33799

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLDWYYTFVILAKTLNYRLASEEINLTIPSIHKQIKNLEQHLNVKLFETYKNQIILTED
CCCCHHHHHHHHHHHHCCEEECCEEEEECHHHHHHHHHHHHHCCEEEEEECCCEEEEEEC
GHTFLPIAQSFIEQYESGIKHIQLKKTMFQSKLNVVVSSYIATFIMPKFLKSFFNEHPFI
CCEEHHHHHHHHHHHHHCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
DVSLHVKNENIEKDINNHTYDIGISRNQPKLREVHSEKVCEGKIVLIAPNKENNHLLTEA
EEEEEEECCCCHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCEEEEHH
SLFEKYKIISDNHPEYWSSLKNNILNIYEKAQFLSINDVHTSIKLIEMNQGISFLPLYIT
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCEEEEEEEEECCCCEEEEEEEE
TNSDYNISVINTKILQAPISFTYIYSKKESPEILVFIKSFKKYIANEQL
ECCCEEEEEEEHEEEECCCEEEEEEECCCCCCEEEEHHHHHHHHCCCCC
>Mature Secondary Structure
MNLDWYYTFVILAKTLNYRLASEEINLTIPSIHKQIKNLEQHLNVKLFETYKNQIILTED
CCCCHHHHHHHHHHHHCCEEECCEEEEECHHHHHHHHHHHHHCCEEEEEECCCEEEEEEC
GHTFLPIAQSFIEQYESGIKHIQLKKTMFQSKLNVVVSSYIATFIMPKFLKSFFNEHPFI
CCEEHHHHHHHHHHHHHCHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
DVSLHVKNENIEKDINNHTYDIGISRNQPKLREVHSEKVCEGKIVLIAPNKENNHLLTEA
EEEEEEECCCCHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCEEEEHH
SLFEKYKIISDNHPEYWSSLKNNILNIYEKAQFLSINDVHTSIKLIEMNQGISFLPLYIT
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCEEEEEEEEECCCCEEEEEEEE
TNSDYNISVINTKILQAPISFTYIYSKKESPEILVFIKSFKKYIANEQL
ECCCEEEEEEEHEEEECCCEEEEEEECCCCCCEEEEHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8978088; 8969509; 9384377 [H]