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The map label for this gene is dus [H]

Identifier: 88193852

GI number: 88193852

Start: 36551

End: 37003

Strand: Reverse

Name: dus [H]

Synonym: SAOUHSC_00031

Alternate gene names: 88193852

Gene position: 37003-36551 (Counterclockwise)

Preceding gene: 88193853

Following gene: 88193849

Centisome position: 1.31

GC content: 35.32

Gene sequence:

>453_bases
ATGAGTAAAGTAGATGCACATTGGGAATTAATCGAAGCTATTAAAAATTTACGTGACGAAATTGCACCAAACACATTGTT
AACAATTAACGATGATATTCCCGATAGAAAAACAGGACTTGAACTTGCAGAAAAATATGGTATTGATGGCATCATGATTG
GTAGAGGCATTTTCCACAATCCATTCACTTTTGAAAAAGAACCACGCGAACACACAAGCAAAGAACTATTAGATTTGTTG
AGATTGCATCTATCATTGTTTAACAAATATGAGAAAGATGAAATACGACAATTCAAGAGTTTGCGTAGATTCTTTAAAAT
CTATGTGCGTGGCATAAGAGGCGCTAGCGAACTTCGCCATCAATTGATGAACACACAATCAATTGCAGAAGTACGAGCAC
TACTAGATGAATTTGAAGCCCAAATGGACGAAGACGTTAAAATTGAATTATAG

Upstream 100 bases:

>100_bases
TATGCTTATAAATATAAATTTATCAACTATAACTAAAAATGATAAAAGATTTAACGCCACTGATGACCGAATTAATATTA
TTTAAGTTTTTATCAAACGC

Downstream 100 bases:

>100_bases
TATGAGTAATAAGGGAAAGGAGGAATTTAAGTTTCCTCCTTTGTTTGTGTGAAAGTCTTTTAGGTATGAACTAGGGTGAT
TTAAAATAAAAGTTTAATTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 149

Protein sequence:

>150_residues
MSKVDAHWELIEAIKNLRDEIAPNTLLTINDDIPDRKTGLELAEKYGIDGIMIGRGIFHNPFTFEKEPREHTSKELLDLL
RLHLSLFNKYEKDEIRQFKSLRRFFKIYVRGIRGASELRHQLMNTQSIAEVRALLDEFEAQMDEDVKIEL

Sequences:

>Translated_150_residues
MSKVDAHWELIEAIKNLRDEIAPNTLLTINDDIPDRKTGLELAEKYGIDGIMIGRGIFHNPFTFEKEPREHTSKELLDLL
RLHLSLFNKYEKDEIRQFKSLRRFFKIYVRGIRGASELRHQLMNTQSIAEVRALLDEFEAQMDEDVKIEL
>Mature_149_residues
SKVDAHWELIEAIKNLRDEIAPNTLLTINDDIPDRKTGLELAEKYGIDGIMIGRGIFHNPFTFEKEPREHTSKELLDLLR
LHLSLFNKYEKDEIRQFKSLRRFFKIYVRGIRGASELRHQLMNTQSIAEVRALLDEFEAQMDEDVKIEL

Specific function: Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs [H]

COG id: COG0042

COG function: function code J; tRNA-dihydrouridine synthase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dus family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR001269
- InterPro:   IPR018517 [H]

Pfam domain/function: PF01207 Dus [H]

EC number: NA

Molecular weight: Translated: 17641; Mature: 17509

Theoretical pI: Translated: 5.67; Mature: 5.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKVDAHWELIEAIKNLRDEIAPNTLLTINDDIPDRKTGLELAEKYGIDGIMIGRGIFHN
CCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCCC
PFTFEKEPREHTSKELLDLLRLHLSLFNKYEKDEIRQFKSLRRFFKIYVRGIRGASELRH
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
QLMNTQSIAEVRALLDEFEAQMDEDVKIEL
HHHCHHHHHHHHHHHHHHHHHCCCCCEECC
>Mature Secondary Structure 
SKVDAHWELIEAIKNLRDEIAPNTLLTINDDIPDRKTGLELAEKYGIDGIMIGRGIFHN
CCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCEEEECCCCCCC
PFTFEKEPREHTSKELLDLLRLHLSLFNKYEKDEIRQFKSLRRFFKIYVRGIRGASELRH
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
QLMNTQSIAEVRALLDEFEAQMDEDVKIEL
HHHCHHHHHHHHHHHHHHHHHCCCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA