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The map label for this gene is yrpB [H]

Identifier: 87201318

GI number: 87201318

Start: 3524917

End: 3525945

Strand: Direct

Name: yrpB [H]

Synonym: Saro_3306

Alternate gene names: 87201318

Gene position: 3524917-3525945 (Clockwise)

Preceding gene: 87201316

Following gene: 87201319

Centisome position: 98.97

GC content: 67.06

Gene sequence:

>1029_bases
ATGACCACCGCTACGCTCCAGACTGCCACGCCCCGCACTTCCGCACTGATGCGTCGCGGCGCCGAGTTCCTCGGCACGAG
CCACGCCATACTGTGCGGAGCGATGAGCTGGGTTTCGGAGCGACACCTGGTCTCGGCCATCAGCAATGCCGGCGGCTTCG
GCGTGATCGCCTGCGGTGCGATGACGCCCGAATTGCTGGACCGCGAGATCGCGGCGACCAAGGCCATGACGGACAAGCCG
TTCGGCGTGAACCTGATCACCATGCACCCGGCCCTGTTCGACCTGATCGCGGTCTGCGCGAACCACAAGGTAGGCCATGT
CGTGCTGGCCGGCGGCATCCCGCCAAAGGGCAGCGTCGAGGCAATCAAGGCGTTCGGAGCCAAGGTCCTGGTGTTCGCCC
CCACGCTGGCGCTGGCCAAGAAGCTGCTGCGCTCGGGCGCGGACGCGCTGGTCATCGAAGGGTCGGAAGCGGGCGGGCAC
ATCGGGCCTGTCTCCACCTCTGTCCTGGCGCAGGAATTCCTGCCCGCGCTGGCCGAAGAACACGTGGTCTTCGTGGCGGG
CGGCATCGGGCGCGGCGAGATGATCGCGAGCTATCTCGAAATGGGTGCATCGGGCGTCCAGCTCGGCACCCGCTTTGCCT
GCGCAACGGAATCGATCGCGCACCCGGCGTTCAAGCAGGCGTTCTTCCGCGGCAATGCGCGCGATGCCGTGGCTTCGGTG
CAGGTCGACCCGCGTCTGCCGGTGATCCCGGTCCGCGCACTGAAGAACAAGGGAACCGAAGAGTTCACCGCCAAGCAGGT
CGAAGTGGCCAAGATGCTGGACGAGGGCAAGGTCGACATGGCGGCGGCGCAGCTCGAGATCGAGCACTTCTGGGCAGGCG
CGCTGCGCCGCGCGGTGATCGACGGCGATGTGGAACGCGGTTCGGTCATGGCCGGACAGTCGGTCGGCATGGTGACCCGG
GAAGAGCCCGTGGCTGACATCATCGCGCAGCTCATGGCGGAAAGCGAAACGGCCCTGACGCGCCGCTGA

Upstream 100 bases:

>100_bases
GAGATATCGTATGCGCCGATCAAGCCGTTGAAGTCCTGCCTTGTTGCCGACAAGATGCCGCCCTAAAGCGCGCGCCAGTT
CACGGACGGGATCCCATTGC

Downstream 100 bases:

>100_bases
CGCCGCCCGGCCCGGCGGCTCCGCCGGACCACCGGCACCGGAGATTTCCCAATGCAGCACCGCGCCTCGTTCGGTATCGT
CTTCGCGATCGTGATGATCG

Product: 2-nitropropane dioxygenase

Products: NA

Alternate protein names: Nitroalkane oxidase [H]

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MTTATLQTATPRTSALMRRGAEFLGTSHAILCGAMSWVSERHLVSAISNAGGFGVIACGAMTPELLDREIAATKAMTDKP
FGVNLITMHPALFDLIAVCANHKVGHVVLAGGIPPKGSVEAIKAFGAKVLVFAPTLALAKKLLRSGADALVIEGSEAGGH
IGPVSTSVLAQEFLPALAEEHVVFVAGGIGRGEMIASYLEMGASGVQLGTRFACATESIAHPAFKQAFFRGNARDAVASV
QVDPRLPVIPVRALKNKGTEEFTAKQVEVAKMLDEGKVDMAAAQLEIEHFWAGALRRAVIDGDVERGSVMAGQSVGMVTR
EEPVADIIAQLMAESETALTRR

Sequences:

>Translated_342_residues
MTTATLQTATPRTSALMRRGAEFLGTSHAILCGAMSWVSERHLVSAISNAGGFGVIACGAMTPELLDREIAATKAMTDKP
FGVNLITMHPALFDLIAVCANHKVGHVVLAGGIPPKGSVEAIKAFGAKVLVFAPTLALAKKLLRSGADALVIEGSEAGGH
IGPVSTSVLAQEFLPALAEEHVVFVAGGIGRGEMIASYLEMGASGVQLGTRFACATESIAHPAFKQAFFRGNARDAVASV
QVDPRLPVIPVRALKNKGTEEFTAKQVEVAKMLDEGKVDMAAAQLEIEHFWAGALRRAVIDGDVERGSVMAGQSVGMVTR
EEPVADIIAQLMAESETALTRR
>Mature_341_residues
TTATLQTATPRTSALMRRGAEFLGTSHAILCGAMSWVSERHLVSAISNAGGFGVIACGAMTPELLDREIAATKAMTDKPF
GVNLITMHPALFDLIAVCANHKVGHVVLAGGIPPKGSVEAIKAFGAKVLVFAPTLALAKKLLRSGADALVIEGSEAGGHI
GPVSTSVLAQEFLPALAEEHVVFVAGGIGRGEMIASYLEMGASGVQLGTRFACATESIAHPAFKQAFFRGNARDAVASVQ
VDPRLPVIPVRALKNKGTEEFTAKQVEVAKMLDEGKVDMAAAQLEIEHFWAGALRRAVIDGDVERGSVMAGQSVGMVTRE
EPVADIIAQLMAESETALTRR

Specific function: Catalyzes the oxidation of alkyl nitronates to produce the corresponding carbonyl compounds and nitrites [H]

COG id: COG2070

COG function: function code R; Dioxygenases related to 2-nitropropane dioxygenase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitronate monooxygenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004136
- InterPro:   IPR013785 [H]

Pfam domain/function: PF03060 NPD [H]

EC number: =1.13.12.16 [H]

Molecular weight: Translated: 35822; Mature: 35691

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTATLQTATPRTSALMRRGAEFLGTSHAILCGAMSWVSERHLVSAISNAGGFGVIACGA
CCCCEECCCCCHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
MTPELLDREIAATKAMTDKPFGVNLITMHPALFDLIAVCANHKVGHVVLAGGIPPKGSVE
CCHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHCCCCCEEEEECCCCCCCCHH
AIKAFGAKVLVFAPTLALAKKLLRSGADALVIEGSEAGGHIGPVSTSVLAQEFLPALAEE
HHHHCCCEEEEEHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC
HVVFVAGGIGRGEMIASYLEMGASGVQLGTRFACATESIAHPAFKQAFFRGNARDAVASV
CEEEEECCCCHHHHHHHHHHCCCCCHHHCCHHHHHHHHHCCHHHHHHHHCCCCCHHEEEE
QVDPRLPVIPVRALKNKGTEEFTAKQVEVAKMLDEGKVDMAAAQLEIEHFWAGALRRAVI
EECCCCCEEEHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
DGDVERGSVMAGQSVGMVTREEPVADIIAQLMAESETALTRR
CCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCC
>Mature Secondary Structure 
TTATLQTATPRTSALMRRGAEFLGTSHAILCGAMSWVSERHLVSAISNAGGFGVIACGA
CCCEECCCCCHHHHHHHCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
MTPELLDREIAATKAMTDKPFGVNLITMHPALFDLIAVCANHKVGHVVLAGGIPPKGSVE
CCHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHCCCCCEEEEECCCCCCCCHH
AIKAFGAKVLVFAPTLALAKKLLRSGADALVIEGSEAGGHIGPVSTSVLAQEFLPALAEE
HHHHCCCEEEEEHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCC
HVVFVAGGIGRGEMIASYLEMGASGVQLGTRFACATESIAHPAFKQAFFRGNARDAVASV
CEEEEECCCCHHHHHHHHHHCCCCCHHHCCHHHHHHHHHCCHHHHHHHHCCCCCHHEEEE
QVDPRLPVIPVRALKNKGTEEFTAKQVEVAKMLDEGKVDMAAAQLEIEHFWAGALRRAVI
EECCCCCEEEHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
DGDVERGSVMAGQSVGMVTREEPVADIIAQLMAESETALTRR
CCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9308178; 9384377 [H]