| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is 87201206
Identifier: 87201206
GI number: 87201206
Start: 3412609
End: 3413604
Strand: Reverse
Name: 87201206
Synonym: Saro_3194
Alternate gene names: NA
Gene position: 3413604-3412609 (Counterclockwise)
Preceding gene: 87201207
Following gene: 87201205
Centisome position: 95.85
GC content: 67.37
Gene sequence:
>996_bases ATGCGCATGTTCAATCCCTTCGCCCTTCGTGAGCGCCGCCATCGCGGTCAGCGGCTTGCGGCGCTGCTTCTCGGCCTCGC CGTGGTGTCCGCGATCCCGGCAAGTGCTCTCATGGCGCAGGGGCAGCGTTCGCCTTACACCGTGGTGGAGACAGGGCGCA GCTACCCCGCGCTTCAGCAGGCGGTGAATGCCATCGGAGAAGGCGCGGGCACGATCCGCATCGCGCCGGGTGTCTATCGG GACTGCGCGGTGCAGCAGGCAGGCGACGTCGGTTTCGTGGCGGAAGTGCCGGGGCAGGCGGTATTCGACGGCGCCGCCTG CGAAGGCAAGGCCGCCATCGTCGCCCGTGGCCGCGCGACCCGGGTCGAAGGCGTGATTTTCCAGAACATTCGCGTGCCCG ATGCCAATGGCTCGGGCATTCGCCTCGAACGGGGCAACCTGACCGTGCGGCAATCCTGGTTCCGCGACAGCGAGCAGGGC ATCCTGTCCGCTGACGATCCGGTTGGCTCGGTGCTGATCGAAAAGTCGACCTTCACCCGCCTCGGCCGTTGCGACCGTGG GCTGGCCTGCGCGCATTCGGTCTATTTCGGCGACTATGGCAGCGTCACGATCCGCCGCAGCCGCTTCGAGGCCGGGCGCG GCGGGCATTACGTCAAGAGCCGCGCCGGTCGCGTAGAGGTTACGCAGTCGAGCTTCGACGACACGGCGGGACAGGCCACC AACTACATGATCGACCTGCCGGCCGGCGCGACCGGGCGCATTGCCGAAAACCTGTTCGTGCAGGGGAAGGACAAGGAGAA CTACAGCGCATTCATCGCCGTGGCGGCCGAGGGCCGGGCGCACAGCTCCGCTGGCCTTGCAATTGCCGGTAACGACGCAC GGTTCGCACCCGGGATCACCCGCTCGTCGGCTTTCGTGGCGGACTGGTCGGGCGATTCTATCGCGATCGGCGCAAACGGT CTTGGCGCCGGGCTGGTGCGGTACGAAAAGCGCTGA
Upstream 100 bases:
>100_bases CTGGGGCGGGAAGCGTTGACCGGTGCCTACGGCGGAAACCGCAACCGCCTGTCAATCATTGCGCGCTACCCGGTATCCGT GAATTGCCGGGAAACTCAGG
Downstream 100 bases:
>100_bases ACTTGCCCTTGGCGGCACCTGACCCTACCTTGGAAGGGTGTTGAGCCGCCTTTCCCTGACACTGGCGGGCCGGTTGTGGG CGGCATTGCTGGCCCTGACC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 331; Mature: 331
Protein sequence:
>331_residues MRMFNPFALRERRHRGQRLAALLLGLAVVSAIPASALMAQGQRSPYTVVETGRSYPALQQAVNAIGEGAGTIRIAPGVYR DCAVQQAGDVGFVAEVPGQAVFDGAACEGKAAIVARGRATRVEGVIFQNIRVPDANGSGIRLERGNLTVRQSWFRDSEQG ILSADDPVGSVLIEKSTFTRLGRCDRGLACAHSVYFGDYGSVTIRRSRFEAGRGGHYVKSRAGRVEVTQSSFDDTAGQAT NYMIDLPAGATGRIAENLFVQGKDKENYSAFIAVAAEGRAHSSAGLAIAGNDARFAPGITRSSAFVADWSGDSIAIGANG LGAGLVRYEKR
Sequences:
>Translated_331_residues MRMFNPFALRERRHRGQRLAALLLGLAVVSAIPASALMAQGQRSPYTVVETGRSYPALQQAVNAIGEGAGTIRIAPGVYR DCAVQQAGDVGFVAEVPGQAVFDGAACEGKAAIVARGRATRVEGVIFQNIRVPDANGSGIRLERGNLTVRQSWFRDSEQG ILSADDPVGSVLIEKSTFTRLGRCDRGLACAHSVYFGDYGSVTIRRSRFEAGRGGHYVKSRAGRVEVTQSSFDDTAGQAT NYMIDLPAGATGRIAENLFVQGKDKENYSAFIAVAAEGRAHSSAGLAIAGNDARFAPGITRSSAFVADWSGDSIAIGANG LGAGLVRYEKR >Mature_331_residues MRMFNPFALRERRHRGQRLAALLLGLAVVSAIPASALMAQGQRSPYTVVETGRSYPALQQAVNAIGEGAGTIRIAPGVYR DCAVQQAGDVGFVAEVPGQAVFDGAACEGKAAIVARGRATRVEGVIFQNIRVPDANGSGIRLERGNLTVRQSWFRDSEQG ILSADDPVGSVLIEKSTFTRLGRCDRGLACAHSVYFGDYGSVTIRRSRFEAGRGGHYVKSRAGRVEVTQSSFDDTAGQAT NYMIDLPAGATGRIAENLFVQGKDKENYSAFIAVAAEGRAHSSAGLAIAGNDARFAPGITRSSAFVADWSGDSIAIGANG LGAGLVRYEKR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35016; Mature: 35016
Theoretical pI: Translated: 9.74; Mature: 9.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRMFNPFALRERRHRGQRLAALLLGLAVVSAIPASALMAQGQRSPYTVVETGRSYPALQQ CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCEEEEECCCCCHHHHH AVNAIGEGAGTIRIAPGVYRDCAVQQAGDVGFVAEVPGQAVFDGAACEGKAAIVARGRAT HHHHHCCCCCEEEECCCCHHHHHHHCCCCCCEEEECCCCEEECCCCCCCCEEEEECCCCC RVEGVIFQNIRVPDANGSGIRLERGNLTVRQSWFRDSEQGILSADDPVGSVLIEKSTFTR EECEEEEEEEECCCCCCCEEEEECCCEEEEHHHCCCCCCCCEECCCCCCEEEEECHHHHH LGRCDRGLACAHSVYFGDYGSVTIRRSRFEAGRGGHYVKSRAGRVEVTQSSFDDTAGQAT HHCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCHHHCCCCEEEEECCCCCCCCCCCC NYMIDLPAGATGRIAENLFVQGKDKENYSAFIAVAAEGRAHSSAGLAIAGNDARFAPGIT EEEEECCCCCCCCHHHHEEEECCCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCCCCCC RSSAFVADWSGDSIAIGANGLGAGLVRYEKR CCCEEEEECCCCEEEEECCCCCCCCEEECCC >Mature Secondary Structure MRMFNPFALRERRHRGQRLAALLLGLAVVSAIPASALMAQGQRSPYTVVETGRSYPALQQ CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCEEEEECCCCCHHHHH AVNAIGEGAGTIRIAPGVYRDCAVQQAGDVGFVAEVPGQAVFDGAACEGKAAIVARGRAT HHHHHCCCCCEEEECCCCHHHHHHHCCCCCCEEEECCCCEEECCCCCCCCEEEEECCCCC RVEGVIFQNIRVPDANGSGIRLERGNLTVRQSWFRDSEQGILSADDPVGSVLIEKSTFTR EECEEEEEEEECCCCCCCEEEEECCCEEEEHHHCCCCCCCCEECCCCCCEEEEECHHHHH LGRCDRGLACAHSVYFGDYGSVTIRRSRFEAGRGGHYVKSRAGRVEVTQSSFDDTAGQAT HHCCCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCHHHCCCCEEEEECCCCCCCCCCCC NYMIDLPAGATGRIAENLFVQGKDKENYSAFIAVAAEGRAHSSAGLAIAGNDARFAPGIT EEEEECCCCCCCCHHHHEEEECCCCCCCEEEEEEEECCCCCCCCCEEEECCCCCCCCCCC RSSAFVADWSGDSIAIGANGLGAGLVRYEKR CCCEEEEECCCCEEEEECCCCCCCCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA