| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87201137
Identifier: 87201137
GI number: 87201137
Start: 3336959
End: 3337366
Strand: Direct
Name: 87201137
Synonym: Saro_3125
Alternate gene names: NA
Gene position: 3336959-3337366 (Clockwise)
Preceding gene: 87201136
Following gene: 87201138
Centisome position: 93.69
GC content: 64.46
Gene sequence:
>408_bases ATGGCGGCCCAGAAGGGAAGCGCATTCCTGCTGAAGATCAGCGATGGCGCAGCGACGCCCACCTACAACACCGTAGCGGG ACTTCGCACCACGCAGATGTCGATCAATGGCGAGGCCGTGGTCATCACCAGCAAGGATTCGGGCGGATGGCGCGAGCTGC TGTCCGGGGCCGGCACGCGTTCGGTGACGGTGAGCGCGGCAGGCATCTTCCTGGGAAGTGCCGCCGAAGCGCAGGTACGC GCCAATGCGCTGGGCGGGACGATCGCGGACTACGAACTGTCGTTCGAGGGCGGCGAGAAGATGCGCGGCAAGTTCCTTGT CCAGCGGCTCGACTACTCCGGCGATTTCAACGGCGAGCGCAACTACACCATGACGCTCGAAAGCTCTGGCGTGGTGGCAC AGGCATGA
Upstream 100 bases:
>100_bases CGGGCCGAACAGCGCGGCGAGGCGTTGCGCGTGGTCCTGCTCGAATTCAGGGCGCGCGTGCTCGCCGCCTGACCTTTCCC ATCATCCAAGGAGACATGAC
Downstream 100 bases:
>100_bases TGGCGGACCAGGCGAACCCCCACCGGGGCGAGGCCGTGCTCGTGATAGCCGGACAACCGCTGGTGCTGAGGCCGACGTTC GGCGCTCTGGTGGCGGCCGA
Product: Phage major tail protein, TP901-1
Products: NA
Alternate protein names: Phage Tail Protein -1 Family; Gene Transfer Agent Orf; Phage Protein; Tail Protein
Number of amino acids: Translated: 135; Mature: 134
Protein sequence:
>135_residues MAAQKGSAFLLKISDGAATPTYNTVAGLRTTQMSINGEAVVITSKDSGGWRELLSGAGTRSVTVSAAGIFLGSAAEAQVR ANALGGTIADYELSFEGGEKMRGKFLVQRLDYSGDFNGERNYTMTLESSGVVAQA
Sequences:
>Translated_135_residues MAAQKGSAFLLKISDGAATPTYNTVAGLRTTQMSINGEAVVITSKDSGGWRELLSGAGTRSVTVSAAGIFLGSAAEAQVR ANALGGTIADYELSFEGGEKMRGKFLVQRLDYSGDFNGERNYTMTLESSGVVAQA >Mature_134_residues AAQKGSAFLLKISDGAATPTYNTVAGLRTTQMSINGEAVVITSKDSGGWRELLSGAGTRSVTVSAAGIFLGSAAEAQVRA NALGGTIADYELSFEGGEKMRGKFLVQRLDYSGDFNGERNYTMTLESSGVVAQA
Specific function: Unknown
COG id: COG5437
COG function: function code S; Predicted secreted protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14022; Mature: 13891
Theoretical pI: Translated: 5.13; Mature: 5.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAQKGSAFLLKISDGAATPTYNTVAGLRTTQMSINGEAVVITSKDSGGWRELLSGAGTR CCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHCCCCCC SVTVSAAGIFLGSAAEAQVRANALGGTIADYELSFEGGEKMRGKFLVQRLDYSGDFNGER EEEEEEEEEEECCCCCCEEEEECCCCEEEEEEEEECCCCHHHHHEEEEECCCCCCCCCCC NYTMTLESSGVVAQA CEEEEEECCCEEECC >Mature Secondary Structure AAQKGSAFLLKISDGAATPTYNTVAGLRTTQMSINGEAVVITSKDSGGWRELLSGAGTR CCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCHHHHHCCCCCC SVTVSAAGIFLGSAAEAQVRANALGGTIADYELSFEGGEKMRGKFLVQRLDYSGDFNGER EEEEEEEEEEECCCCCCEEEEECCCCEEEEEEEEECCCCHHHHHEEEEECCCCCCCCCCC NYTMTLESSGVVAQA CEEEEEECCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA