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The map label for this gene is ycdC [C]

Identifier: 87201097

GI number: 87201097

Start: 3305260

End: 3305907

Strand: Direct

Name: ycdC [C]

Synonym: Saro_3085

Alternate gene names: 87201097

Gene position: 3305260-3305907 (Clockwise)

Preceding gene: 87201092

Following gene: 87201099

Centisome position: 92.8

GC content: 68.36

Gene sequence:

>648_bases
TTGTCCAACGCCTCAAGACCCGTAGCGCGCCAGCCCCGTGGCGATGCGACGCGCCACGCCATCCTGACGGCGGCCGAGAC
TGTGTTCGCCGACCTGGGCTACGCCGCAGCACGGCTTGAGGACGTGGCGCAGGTGGTGGGCATCCGCAGGCCCTCGATCG
TCTACTACTTCCCGGGCAAGCGGCAGCTTTACGACGAAGTGGAAGCCGACATCTTTGCGGCGATGCACGCCTTCGTGGTG
GAGCGCATGGCGGAAGCTTCGCGGCCGATCGACCGGCTACTCGCCATTCTCGATGCCTGGCTGGACTTCTTCGTCCAGCG
ACCCACGGCCGCGCGGATCATCCAGAGGCTTGTCGCCGACCCCGGCCCGCGCAGCGAGGACCCGGTGGAATTTTCCGGCA
CCGCACTCGCGGATTTCGAAGCCATCATCGCCTCGGGCGTGGCCGACGGCAGCTTCCGCGAAGTGCCCGCCATGCACATC
CTCAACAGCGTTGCCGCCGGCGCACTGTTTTATGTCTGCAACGCCCGCCAGCTCGGCGCGGGCCGGGAATATGACCCCGC
AGACCCGGCCATCCTCGCCCAGTTCCGCGCTACCCTGCACCGCCAGGCCATCGCCGCGGTCGGCCACGCGGACCAGCCCC
AGGGCTGA

Upstream 100 bases:

>100_bases
AGAGGGCTCATTCGGCGACCTGTCCGACCGGGCTTGGCAGCCGCGACGGACCGGGTAAGAGAGGAGGATTTTCGCGTTTT
CGATGTCGGCAGGAGCGAAC

Downstream 100 bases:

>100_bases
CCCCTGCCAGATGCTCGATCTCCGAGAGAGATGGAGAGCCCTGCCGGATACAAACGGGGGCCCTGCTGAAAGCGACCGCC
CCTTCCCCGCCGAGCGGTAT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; TetR Family Regulatory Protein

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MSNASRPVARQPRGDATRHAILTAAETVFADLGYAAARLEDVAQVVGIRRPSIVYYFPGKRQLYDEVEADIFAAMHAFVV
ERMAEASRPIDRLLAILDAWLDFFVQRPTAARIIQRLVADPGPRSEDPVEFSGTALADFEAIIASGVADGSFREVPAMHI
LNSVAAGALFYVCNARQLGAGREYDPADPAILAQFRATLHRQAIAAVGHADQPQG

Sequences:

>Translated_215_residues
MSNASRPVARQPRGDATRHAILTAAETVFADLGYAAARLEDVAQVVGIRRPSIVYYFPGKRQLYDEVEADIFAAMHAFVV
ERMAEASRPIDRLLAILDAWLDFFVQRPTAARIIQRLVADPGPRSEDPVEFSGTALADFEAIIASGVADGSFREVPAMHI
LNSVAAGALFYVCNARQLGAGREYDPADPAILAQFRATLHRQAIAAVGHADQPQG
>Mature_214_residues
SNASRPVARQPRGDATRHAILTAAETVFADLGYAAARLEDVAQVVGIRRPSIVYYFPGKRQLYDEVEADIFAAMHAFVVE
RMAEASRPIDRLLAILDAWLDFFVQRPTAARIIQRLVADPGPRSEDPVEFSGTALADFEAIIASGVADGSFREVPAMHIL
NSVAAGALFYVCNARQLGAGREYDPADPAILAQFRATLHRQAIAAVGHADQPQG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23301; Mature: 23169

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNASRPVARQPRGDATRHAILTAAETVFADLGYAAARLEDVAQVVGIRRPSIVYYFPGK
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
RQLYDEVEADIFAAMHAFVVERMAEASRPIDRLLAILDAWLDFFVQRPTAARIIQRLVAD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
PGPRSEDPVEFSGTALADFEAIIASGVADGSFREVPAMHILNSVAAGALFYVCNARQLGA
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCC
GREYDPADPAILAQFRATLHRQAIAAVGHADQPQG
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SNASRPVARQPRGDATRHAILTAAETVFADLGYAAARLEDVAQVVGIRRPSIVYYFPGK
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCC
RQLYDEVEADIFAAMHAFVVERMAEASRPIDRLLAILDAWLDFFVQRPTAARIIQRLVAD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
PGPRSEDPVEFSGTALADFEAIIASGVADGSFREVPAMHILNSVAAGALFYVCNARQLGA
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCC
GREYDPADPAILAQFRATLHRQAIAAVGHADQPQG
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA